RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ZNF185O15231 689 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 TLR2O60603 784 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 SERPING1P05155 500 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 ATXN8OSP0DMR3 200 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 PRLRP16471 622 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 NR2F2P24468 414 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 HOXD13P35453 343 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 POLR2FP61218 127 aaKnown RBP11.11□□□□□ -0.63
VPS53-220ENST00000576149 GFPT1Q06210 699 aaPredicted RBP11.11□□□□□ -0.63
VPS53-220ENST00000576149 KNOP1Q1ED39 458 aaKnown RBP11.11□□□□□ -0.63
VPS53-220ENST00000576149 SLC9C1Q4G0N8 1177 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 SFMBT2Q5VUG0 894 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 SFR1Q86XK3 245 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 SNX12Q9UMY4 172 aa11.11□□□□□ -0.63
VPS53-220ENST00000576149 PDE2AO00408 941 aaPredicted RBP11.1□□□□□ -0.63
VPS53-220ENST00000576149 EML1O00423 815 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 POLR3GO15318 223 aaPredicted RBP11.1□□□□□ -0.63
VPS53-220ENST00000576149 MOCS3O95396 460 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 CYP4A11Q02928 519 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 RSBN1LQ6PCB5 846 aaPredicted RBP11.1□□□□□ -0.63
VPS53-220ENST00000576149 TXLNBQ8N3L3 684 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 ACER1Q8TDN7 264 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 FAM151AQ8WW52 585 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 EIF2AK1Q9BQI3 630 aaKnown RBP11.1□□□□□ -0.63
VPS53-220ENST00000576149 CRACR2AQ9BSW2 395 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 BHMT2Q9H2M3 363 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 SUGCTQ9HAC7 445 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 ZHX1Q9UKY1 873 aaPredicted RBP11.1□□□□□ -0.63
VPS53-220ENST00000576149 CLRN2A0PK11 232 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 TARSL2A2RTX5 802 aaKnown RBP11.1□□□□□ -0.63
VPS53-220ENST00000576149 PDXKO00764 312 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 C21orf2O43822 256 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 EYA4O95677 639 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 KCNH2Q12809 1159 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 BMT2Q1RMZ1 405 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 TDRD12Q587J7 1177 aaKnown RBP11.1□□□□□ -0.63
VPS53-220ENST00000576149 FRMD5Q7Z6J6 570 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 GPIHBP1Q8IV16 184 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 GOPCQ9HD26 462 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 ZCCHC17Q9NP64 241 aaKnown RBP11.1□□□□□ -0.63
VPS53-220ENST00000576149 ZNF70Q9UC06 446 aaPredicted RBP11.1□□□□□ -0.63
VPS53-220ENST00000576149 SALL4Q9UJQ4 1053 aa11.1□□□□□ -0.63
VPS53-220ENST00000576149 MYBP10242 640 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 MCM3P25205 808 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 SLC15A2Q16348 729 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 OTOP1Q7RTM1 612 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 CREG2Q8IUH2 290 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 RNF10Q8N5U6 811 aaKnown RBP11.09□□□□□ -0.63
VPS53-220ENST00000576149 CAGE1Q8TC20 777 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 ALS2CR12Q96Q35 445 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 GMLQ99445 158 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 HSD17B14Q9BPX1 270 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 WDR18Q9BV38 432 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 RUSC1Q9BVN2 902 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 RANBP17Q9H2T7 1088 aaKnown RBP11.09□□□□□ -0.63
VPS53-220ENST00000576149 RGL1Q9NZL6 768 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 AIPL1Q9NZN9 384 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 ZBTB21Q9ULJ3 1066 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 RABGAP1Q9Y3P9 1069 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 RSPH10B2B2RC85 870 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 H3BQF6 201 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 CALUO43852 315 aaPredicted RBP11.09□□□□□ -0.63
VPS53-220ENST00000576149 PSMD10O75832 226 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 PRPF6O94906 941 aaKnown RBP11.09□□□□□ -0.63
VPS53-220ENST00000576149 CFBP00751 764 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 MYCNP04198 464 aaPredicted RBP11.09□□□□□ -0.63
VPS53-220ENST00000576149 VIL1P09327 827 aaKnown RBP11.09□□□□□ -0.63
VPS53-220ENST00000576149 RSPH10BP0C881 870 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 EPS15P42566 896 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 APBA1Q02410 837 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 RASSF7Q02833 373 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 CASP8Q14790 479 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 DLGAP5Q15398 846 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 IQCEQ6IPM2 695 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 ZNF572Q7Z3I7 529 aaPredicted RBP11.09□□□□□ -0.63
VPS53-220ENST00000576149 TBC1D5Q92609 795 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 GANQ9H2C0 597 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 ARMCX3Q9UH62 379 aaPredicted RBP11.09□□□□□ -0.63
VPS53-220ENST00000576149 HDAC9Q9UKV0 1011 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 CNTNAP1P78357 1384 aa11.09□□□□□ -0.63
VPS53-220ENST00000576149 GCOM1H8Y6P7 765 aaPredicted RBP11.08□□□□□ -0.64
VPS53-220ENST00000576149 POLR2MP0CAP2 368 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 ITIH3Q06033 890 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 GPS2Q13227 327 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 PPP2R5CQ13362 524 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 RINT1Q6NUQ1 792 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 DPY19L2P1Q6NXN4 242 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 CHURC1Q8WUH1 139 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 SLC5A5Q92911 643 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 PDE11AQ9HCR9 933 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 TUFT1Q9NNX1 390 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 OLFML3Q9NRN5 406 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 TYW1Q9NV66 732 aaKnown RBP11.08□□□□□ -0.64
VPS53-220ENST00000576149 ASTN1O14525 1302 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 ATAD5Q96QE3 1844 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 PLA2G6O60733 806 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 TBCAO75347 108 aaKnown RBP11.08□□□□□ -0.64
VPS53-220ENST00000576149 EIF3JO75822 258 aaKnown RBP11.08□□□□□ -0.64
VPS53-220ENST00000576149 SLITRK3O94933 977 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 AFPP02771 609 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms