RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 BBOX1O75936 387 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 SNUPNO95149 360 aaKnown RBP7.89□□□□□ -1.15
VPS53-217ENST00000575100 GLULP15104 373 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 ZKSCAN1P17029 563 aaPredicted RBP7.89□□□□□ -1.15
VPS53-217ENST00000575100 ADORA1P30542 326 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 HOXC13P31276 330 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 PRKG2Q13237 762 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 GRB10Q13322 594 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 TRIM14Q14142 442 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 AOC3Q16853 763 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 METTL24Q5JXM2 366 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 INTS11Q5TA45 600 aaKnown RBP7.89□□□□□ -1.15
VPS53-217ENST00000575100 HEATR6Q6AI08 1181 aaKnown RBP7.89□□□□□ -1.15
VPS53-217ENST00000575100 SP8Q8IXZ3 490 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 ZNF511Q8NB15 262 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 MPHOSPH8Q99549 860 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 IFT22Q9H7X7 185 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 PSME4Q14997 1843 aa7.89□□□□□ -1.15
VPS53-217ENST00000575100 A0A1B0GUL7 405 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 DDX3YO15523 660 aaKnown RBP7.88□□□□□ -1.15
VPS53-217ENST00000575100 PDE8BO95263 885 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 CNOT4O95628 575 aaKnown RBP7.88□□□□□ -1.15
VPS53-217ENST00000575100 IGHMBP2P38935 993 aaKnown RBP7.88□□□□□ -1.15
VPS53-217ENST00000575100 MAPK9P45984 424 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 ID4P47928 161 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 RPS8P62241 208 aaKnown RBP7.88□□□□□ -1.15
VPS53-217ENST00000575100 ROR1Q01973 937 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 CHRNDQ07001 517 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 KIAA2012Q0VF49 1180 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 SAPCD2Q86UD0 394 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 ANKRD18AQ8IVF6 992 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 HSCBQ8IWL3 235 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 SPATA5Q8NB90 893 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 FUBP3Q96I24 572 aaKnown RBP eCLIP7.88□□□□□ -1.15
VPS53-217ENST00000575100 RSAD1Q9HA92 442 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 TRIM39Q9HCM9 518 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 CD248Q9HCU0 757 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 ABCB6Q9NP58 842 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 BLOC1S4Q9NUP1 217 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 STAP2Q9UGK3 403 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 FBXO10Q9UK96 956 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 ODF2LQ9ULJ1 636 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 MINPP1Q9UNW1 487 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 ZNF232Q9UNY5 417 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 GIT1Q9Y2X7 761 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 TMX2Q9Y320 296 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 ITIH6Q6UXX5 1313 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 PABPN1LA6NDY0 278 aaKnown RBP7.88□□□□□ -1.15
VPS53-217ENST00000575100 RRP9O43818 475 aaKnown RBP7.88□□□□□ -1.15
VPS53-217ENST00000575100 SUSD5O60279 629 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 ZEB2O60315 1214 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 BAIAP3O94812 1187 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 MBD4O95243 580 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 HNRNPCP07910 306 aaKnown RBP eCLIP7.88□□□□□ -1.15
VPS53-217ENST00000575100 KLRK1P26718 216 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 OAS2P29728 719 aaKnown RBP7.88□□□□□ -1.15
VPS53-217ENST00000575100 ADD2P35612 726 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 GMPSP49915 693 aaPredicted RBP7.88□□□□□ -1.15
VPS53-217ENST00000575100 GRAPQ13588 217 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 TTC22Q5TAA0 569 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 KIAA1614Q5VZ46 1190 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 CIAPIN1Q6FI81 312 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 LMNTD2Q8IXW0 634 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 GRAPLQ8TC17 118 aaPredicted RBP7.88□□□□□ -1.15
VPS53-217ENST00000575100 ATRIPQ8WXE1 791 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 SGCZQ96LD1 299 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 EHD4Q9H223 541 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 EHMT1Q9H9B1 1298 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 AAASQ9NRG9 546 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 DZANK1Q9NVP4 752 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 ABCF2Q9UG63 623 aa7.88□□□□□ -1.15
VPS53-217ENST00000575100 A0A1B0GUL6 1792 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 AKAP11Q9UKA4 1901 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 FAM170AA1A519 330 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 ENC1O14682 589 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 TMCC2O75069 709 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 AOC2O75106 756 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 PRKD3O94806 890 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 RHCEP18577 417 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 FGFR2P21802 821 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 RHDQ02161 417 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 TNIP1Q15025 636 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 MYLK4Q86YV6 388 aaPredicted RBP7.87□□□□□ -1.15
VPS53-217ENST00000575100 MPNDQ8N594 471 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 FAM26EQ8N5C1 309 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 CCT6BQ92526 530 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 EDC3Q96F86 508 aaKnown RBP7.87□□□□□ -1.15
VPS53-217ENST00000575100 CRB3Q9BUF7 120 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 ARHGEF4Q9NR80 690 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 PDP2Q9P2J9 529 aa7.87□□□□□ -1.15
VPS53-217ENST00000575100 FNDC3AQ9Y2H6 1198 aaKnown RBP7.87□□□□□ -1.15
VPS53-217ENST00000575100 MROH5Q6ZUA9 1318 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 A0A1W2PP55 124 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 CELF2O95319 508 aaKnown RBP7.86□□□□□ -1.15
VPS53-217ENST00000575100 LTFP02788 710 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 UBA7P41226 1012 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 GRK6P43250 576 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 RECQLP46063 649 aaPredicted RBP7.86□□□□□ -1.15
VPS53-217ENST00000575100 SCARF1Q14162 830 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 NCAPHQ15003 741 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms