RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ANO3Q9BYT9 981 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 IL23AQ9NPF7 189 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 ZNF215Q9UL58 517 aaPredicted RBP9.25□□□□□ -0.93
VPS53-214ENST00000572607 XIRP2A4UGR9 3374 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 NCOR1O75376 2440 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 ESYT2A0FGR8 921 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 LGALS2P05162 132 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 PFKMP08237 780 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 ACTN1P12814 892 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 RFC2P35250 354 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 EVCP57679 992 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 SP4Q02446 784 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 TOB2Q14106 344 aaPredicted RBP9.24□□□□□ -0.93
VPS53-214ENST00000572607 LAPTM4AQ15012 233 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 KIAA0753Q2KHM9 967 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 JAKMIP3Q5VZ66 844 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 REXO1Q8N1G1 1221 aaKnown RBP9.24□□□□□ -0.93
VPS53-214ENST00000572607 CAGE1Q8TC20 777 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 KAT2BQ92831 832 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 SDF4Q9BRK5 362 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 JADE2Q9NQC1 790 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 PKD2L1Q9P0L9 805 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 HDAC6Q9UBN7 1215 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 GTF2IRD1Q9UHL9 959 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 TCEAL9Q9UHQ7 104 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 UBIAD1Q9Y5Z9 338 aa9.24□□□□□ -0.93
VPS53-214ENST00000572607 BAZ2BQ9UIF8 2168 aaKnown RBP9.23□□□□□ -0.93
VPS53-214ENST00000572607 C17orf102A2RUQ5 167 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 H3BRB1 525 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 HAS3O00219 553 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 DEXIO95424 95 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 FGBP02675 491 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 ACRP10323 421 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 GNAT1P11488 350 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 HOXD8P13378 290 aaPredicted RBP9.23□□□□□ -0.93
VPS53-214ENST00000572607 ITGB5P18084 799 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 SREBF1P36956 1147 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 NLRP5P59047 1200 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 STK3Q13188 491 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 SEMA3FQ13275 785 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 CEP55Q53EZ4 464 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 UTP14CQ5TAP6 766 aaKnown RBP9.23□□□□□ -0.93
VPS53-214ENST00000572607 NUDT18Q6ZVK8 323 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 ZNF365Q70YC5 407 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 PPP1R13LQ8WUF5 828 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 PGBD1Q96JS3 809 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 GPR20Q99678 358 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.23□□□□□ -0.931e-6■■□□□ 12.3
VPS53-214ENST00000572607 MXRA8Q9BRK3 442 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 ZMYND12Q9H0C1 365 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 WNT8AQ9H1J5 351 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 SLKQ9H2G2 1235 aaPredicted RBP9.23□□□□□ -0.93
VPS53-214ENST00000572607 TUT1Q9H6E5 874 aaKnown RBP9.23□□□□□ -0.93
VPS53-214ENST00000572607 IL21Q9HBE4 155 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 NCOA5Q9HCD5 579 aaKnown RBP9.23□□□□□ -0.93
VPS53-214ENST00000572607 JPH1Q9HDC5 661 aaPredicted RBP9.23□□□□□ -0.93
VPS53-214ENST00000572607 TMEM260Q9NX78 707 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 UMODL1Q5DID0 1318 aa9.23□□□□□ -0.93
VPS53-214ENST00000572607 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.22□□□□□ -0.93
VPS53-214ENST00000572607 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.22□□□□□ -0.93
VPS53-214ENST00000572607 ZBBXA8MT70 800 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 PPFIA3O75145 1194 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 PARNO95453 639 aaKnown RBP9.22□□□□□ -0.93
VPS53-214ENST00000572607 FOSL2P15408 326 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 KCNA2P16389 499 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 XBP1P17861 261 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 TCF7P36402 384 aaPredicted RBP9.22□□□□□ -0.93
VPS53-214ENST00000572607 CLK2P49760 499 aaKnown RBP9.22□□□□□ -0.93
VPS53-214ENST00000572607 ARHGAP4P98171 946 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 PTK7Q13308 1070 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 GRIN2CQ14957 1233 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 NTRK3Q16288 839 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 TMEM240Q5SV17 173 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 GDF6Q6KF10 455 aaPredicted RBP9.22□□□□□ -0.93
VPS53-214ENST00000572607 AFAP1L1Q8TED9 768 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 SEPT1Q8WYJ6 367 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 GLG1Q92896 1179 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 TNPO1Q92973 898 aaKnown RBP9.22□□□□□ -0.93
VPS53-214ENST00000572607 SCLYQ96I15 445 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 MTRQ99707 1265 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 C16orf70Q9BSU1 422 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 C22orf23Q9BZE7 217 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 FTOQ9C0B1 505 aaKnown RBP eCLIP9.22□□□□□ -0.93
VPS53-214ENST00000572607 AZI2Q9H6S1 392 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 CDHR5Q9HBB8 845 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 SH3GLB2Q9NR46 395 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 VPS54Q9P1Q0 977 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 TRANK1O15050 2925 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 BDP1A6H8Y1 2624 aa9.22□□□□□ -0.93
VPS53-214ENST00000572607 TCF20Q9UGU0 1960 aaKnown RBP9.21□□□□□ -0.93
VPS53-214ENST00000572607 ATP9AO75110 1047 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 IQCF3P0C7M6 154 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 SMIM10L2AP0DMW4 78 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 SMIM10L2BP0DMW5 78 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 SELPP16109 830 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 AK2P54819 239 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 SETQ01105 290 aaPredicted RBP9.21□□□□□ -0.94
VPS53-214ENST00000572607 PKN1Q16512 942 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 LRRC8DQ7L1W4 858 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 NIPA1Q7RTP0 329 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms