RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 SEC62Q99442 399 aaKnown RBP15.21■□□□□ 0.03
CCDC40-208ENST00000572270 LRRCC1Q9C099 1032 aa15.21■□□□□ 0.03
CCDC40-208ENST00000572270 NRCAMQ92823 1304 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 PI15O43692 258 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 FGF18O76093 207 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 SNHG28P0DPA3 235 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 ADAM17P78536 824 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 SP2Q02086 613 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 ITIH3Q06033 890 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 KCNC3Q14003 757 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 FBXO47Q5MNV8 452 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 PLCD3Q8N3E9 789 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 LINC01599Q8WXQ3 324 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 PDCD2LQ9BRP1 358 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 UBA5Q9GZZ9 404 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 ENTPD7Q9NQZ7 604 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 TCP11L1Q9NUJ3 509 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 TMEM260Q9NX78 707 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 R4GN57 208 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 ACACBO00763 2458 aa15.2■□□□□ 0.02
CCDC40-208ENST00000572270 GOLGA8HP0CJ92 632 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 SCG2P13521 617 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 SDHBP21912 280 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 CD52P31358 61 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 MTHFRP42898 656 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 ERVFC1P60507 584 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 RUFY4Q6ZNE9 571 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 ZDHHC14Q8IZN3 488 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 CPVLQ9H3G5 476 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 LIMD1Q9UGP4 676 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 ANAPC4Q9UJX5 808 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 FBXL21Q9UKT6 434 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 SUPT16HQ9Y5B9 1047 aaKnown RBP15.19■□□□□ 0.02
CCDC40-208ENST00000572270 CDY2AQ9Y6F7 541 aa15.19■□□□□ 0.02
CCDC40-208ENST00000572270 FSCN2O14926 492 aa15.18■□□□□ 0.02
CCDC40-208ENST00000572270 IBSPP21815 317 aaPredicted RBP15.18■□□□□ 0.02
CCDC40-208ENST00000572270 RFX1P22670 979 aa15.18■□□□□ 0.02
CCDC40-208ENST00000572270 CCND2P30279 289 aa15.18■□□□□ 0.02
CCDC40-208ENST00000572270 GATMP50440 423 aa15.18■□□□□ 0.02
CCDC40-208ENST00000572270 TRIM50Q86XT4 487 aa15.18■□□□□ 0.02
CCDC40-208ENST00000572270 SIRT2Q8IXJ6 389 aa15.18■□□□□ 0.02
CCDC40-208ENST00000572270 CRIPAKQ8N1N5 446 aa15.18■□□□□ 0.02
CCDC40-208ENST00000572270 TCF25Q9BQ70 676 aa15.18■□□□□ 0.02
CCDC40-208ENST00000572270 ADAM7Q9H2U9 754 aa15.18■□□□□ 0.02
CCDC40-208ENST00000572270 PUF60Q9UHX1 559 aaKnown RBP15.18■□□□□ 0.02
CCDC40-208ENST00000572270 CDH22Q9UJ99 828 aa15.18■□□□□ 0.02
CCDC40-208ENST00000572270 BAHCC1Q9P281 2608 aa15.17■□□□□ 0.02
CCDC40-208ENST00000572270 STK25O00506 426 aa15.17■□□□□ 0.02
CCDC40-208ENST00000572270 DHX16O60231 1041 aaKnown RBP15.17■□□□□ 0.02
CCDC40-208ENST00000572270 SMARCA5O60264 1052 aaPredicted RBP15.17■□□□□ 0.02
CCDC40-208ENST00000572270 HSD17B4P51659 736 aa15.17■□□□□ 0.02
CCDC40-208ENST00000572270 PGM5Q15124 567 aa15.17■□□□□ 0.02
CCDC40-208ENST00000572270 UTP14CQ5TAP6 766 aaKnown RBP15.17■□□□□ 0.02
CCDC40-208ENST00000572270 KIAA0319Q5VV43 1072 aa15.17■□□□□ 0.02
CCDC40-208ENST00000572270 METTL7BQ6UX53 244 aa15.17■□□□□ 0.02
CCDC40-208ENST00000572270 VSIG10LQ86VR7 867 aa15.17■□□□□ 0.02
CCDC40-208ENST00000572270 GPKOWQ92917 476 aaPredicted RBP eCLIP15.17■□□□□ 0.02
CCDC40-208ENST00000572270 TTC14Q96N46 770 aa15.17■□□□□ 0.02
CCDC40-208ENST00000572270 NGRNQ9NPE2 291 aaKnown RBP15.17■□□□□ 0.02
CCDC40-208ENST00000572270 DBR1Q9UK59 544 aaKnown RBP15.17■□□□□ 0.02
CCDC40-208ENST00000572270 LZTS1Q9Y250 596 aa15.17■□□□□ 0.02
CCDC40-208ENST00000572270 FNDC1Q4ZHG4 1894 aaPredicted RBP15.16■□□□□ 0.02
CCDC40-208ENST00000572270 CEP250Q9BV73 2442 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 M0QZ92 97 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 RPLP2P05387 115 aaKnown RBP15.16■□□□□ 0.02
CCDC40-208ENST00000572270 NPR3P17342 541 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 APOBRQ0VD83 1088 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 NEDD9Q14511 834 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 QRICH1Q2TAL8 776 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 GNPTABQ3T906 1256 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 TSHZ3Q63HK5 1081 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 CYFIP1Q7L576 1253 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 RTN4RL1Q86UN2 441 aaPredicted RBP15.16■□□□□ 0.02
CCDC40-208ENST00000572270 ADGRF4Q8IZF3 695 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 SIX5Q8N196 739 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 COLGALT1Q8NBJ5 622 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 PANK1Q8TE04 598 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 DNAJB3Q8WWF6 145 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 GPR20Q99678 358 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 AGO3Q9H9G7 860 aaKnown RBP15.16■□□□□ 0.02
CCDC40-208ENST00000572270 RNF216Q9NWF9 866 aaPredicted RBP15.16■□□□□ 0.02
CCDC40-208ENST00000572270 TUBE1Q9UJT0 475 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 USTQ9Y2C2 406 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 PCDHB7Q9Y5E2 793 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 DOCK5Q9H7D0 1870 aa15.16■□□□□ 0.02
CCDC40-208ENST00000572270 TBKBP1A7MCY6 615 aa15.15■□□□□ 0.02
CCDC40-208ENST00000572270 FGRP09769 529 aa15.15■□□□□ 0.02
CCDC40-208ENST00000572270 MRPS6P82932 125 aaKnown RBP15.15■□□□□ 0.02
CCDC40-208ENST00000572270 PPFIA1Q13136 1202 aa15.15■□□□□ 0.02
CCDC40-208ENST00000572270 PAK2Q13177 524 aa15.15■□□□□ 0.02
CCDC40-208ENST00000572270 ZMYM1Q5SVZ6 1142 aa15.15■□□□□ 0.02
CCDC40-208ENST00000572270 IER5Q5VY09 327 aa15.15■□□□□ 0.02
CCDC40-208ENST00000572270 STOX1Q6ZVD7 989 aa15.15■□□□□ 0.02
CCDC40-208ENST00000572270 DCLK2Q8N568 766 aa15.15■□□□□ 0.02
CCDC40-208ENST00000572270 IL31RAQ8NI17 732 aa15.15■□□□□ 0.02
CCDC40-208ENST00000572270 RIN2Q8WYP3 895 aaPredicted RBP15.15■□□□□ 0.02
CCDC40-208ENST00000572270 MRPS27Q92552 414 aaKnown RBP15.15■□□□□ 0.02
CCDC40-208ENST00000572270 CHAMP1Q96JM3 812 aa15.15■□□□□ 0.02
CCDC40-208ENST00000572270 ERVK-5Q9HDB9 667 aa15.15■□□□□ 0.02
CCDC40-208ENST00000572270 CYP26B1Q9NR63 512 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms