RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SREBF1P36956 1147 aa25.06■■□□□ 1.6
VPS53-211ENST00000571805 MRPS25P82663 173 aaKnown RBP25.06■■□□□ 1.6
VPS53-211ENST00000571805 SLC7A5Q01650 507 aa25.06■■□□□ 1.6
VPS53-211ENST00000571805 TMEM179Q6ZVK1 233 aa25.06■■□□□ 1.6
VPS53-211ENST00000571805 FBXO11Q86XK2 927 aa25.06■■□□□ 1.6
VPS53-211ENST00000571805 ERMNQ8TAM6 284 aa25.06■■□□□ 1.6
VPS53-211ENST00000571805 GMCL1Q96IK5 515 aa25.06■■□□□ 1.6
VPS53-211ENST00000571805 REEP2Q9BRK0 252 aa25.06■■□□□ 1.6
VPS53-211ENST00000571805 LUC7LQ9NQ29 371 aaKnown RBP25.06■■□□□ 1.6
VPS53-211ENST00000571805 TULP2O00295 520 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 NAP1L1P55209 391 aaKnown RBP25.05■■□□□ 1.6
VPS53-211ENST00000571805 KNOP1Q1ED39 458 aaKnown RBP25.05■■□□□ 1.6
VPS53-211ENST00000571805 FRMD5Q7Z6J6 570 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 FAM133AQ8N9E0 248 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 FAM20AQ96MK3 541 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 RBM12Q9NTZ6 932 aaKnown RBP25.05■■□□□ 1.6
VPS53-211ENST00000571805 HDAC9Q9UKV0 1011 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 A0A0U1RQG5 324 aaPredicted RBP25.05■■□□□ 1.6
VPS53-211ENST00000571805 PALMO75781 387 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 NDUFB10O96000 172 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 HDLBPQ00341 1268 aaKnown RBP25.05■■□□□ 1.6
VPS53-211ENST00000571805 KLHL30Q0D2K2 578 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 SFR1Q86XK3 245 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 MASTLQ96GX5 879 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 MS4A14Q96JA4 679 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 STIM2Q9P246 746 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 RNF14Q9UBS8 474 aa25.05■■□□□ 1.6
VPS53-211ENST00000571805 OPLAHO14841 1288 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 NPM3O75607 178 aaKnown RBP25.04■■□□□ 1.6
VPS53-211ENST00000571805 FOSP01100 380 aaPredicted RBP25.04■■□□□ 1.6
VPS53-211ENST00000571805 CIITAP33076 1130 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 PDE6BP35913 854 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 ARID5AQ03989 594 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 USH1GQ495M9 461 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 DACT2Q5SW24 774 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 STRIP1Q5VSL9 837 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 LEKR1Q6ZMV7 388 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 ADAMTS1Q9UHI8 967 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 PCDHGC5Q9Y5F6 944 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 SCN9AQ15858 1988 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 GDF11O95390 407 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 FKBP1AP62942 108 aaKnown RBP25.04■■□□□ 1.6
VPS53-211ENST00000571805 ASIC2Q16515 512 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 SYDE2Q5VT97 1194 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 AFAP1L1Q8TED9 768 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 TMX4Q9H1E5 349 aaPredicted RBP25.04■■□□□ 1.6
VPS53-211ENST00000571805 VAV3Q9UKW4 847 aa25.04■■□□□ 1.6
VPS53-211ENST00000571805 MSH4O15457 936 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 ACTN1P12814 892 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 EPS15P42566 896 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 RBM5P52756 815 aaKnown RBP eCLIP25.03■■□□□ 1.6
VPS53-211ENST00000571805 CFAP221Q4G0U5 840 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 PPP1R3FQ6ZSY5 799 aaPredicted RBP25.03■■□□□ 1.6
VPS53-211ENST00000571805 SND1Q7KZF4 910 aaKnown RBP eCLIP25.03■■□□□ 1.6
VPS53-211ENST00000571805 IRF2BP2Q7Z5L9 587 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 COL23A1Q86Y22 540 aaPredicted RBP25.03■■□□□ 1.6
VPS53-211ENST00000571805 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP25.03■■□□□ 1.6
VPS53-211ENST00000571805 PACSIN1Q9BY11 444 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 PLCB1Q9NQ66 1216 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 ZNF646O15015 1829 aaPredicted RBP25.03■■□□□ 1.6
VPS53-211ENST00000571805 SPDYE3A6NKU9 549 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 MYBP10242 640 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 SLC9A1P19634 815 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 JAG1P78504 1218 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 ABCB5Q2M3G0 1257 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 MEI1Q5TIA1 1274 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 TRIM34Q9BYJ4 488 aa25.03■■□□□ 1.6
VPS53-211ENST00000571805 ARMCX3Q9UH62 379 aaPredicted RBP25.03■■□□□ 1.6
VPS53-211ENST00000571805 PDXKO00764 312 aa25.02■■□□□ 1.6
VPS53-211ENST00000571805 TAL1P17542 331 aaPredicted RBP25.02■■□□□ 1.6
VPS53-211ENST00000571805 TNFRSF8P28908 595 aa25.02■■□□□ 1.6
VPS53-211ENST00000571805 KIAA0753Q2KHM9 967 aa25.02■■□□□ 1.6
VPS53-211ENST00000571805 GLE1Q53GS7 698 aaKnown RBP25.02■■□□□ 1.6
VPS53-211ENST00000571805 CWC15Q9P013 229 aaKnown RBP25.02■■□□□ 1.6
VPS53-211ENST00000571805 STK24Q9Y6E0 443 aa25.02■■□□□ 1.6
VPS53-211ENST00000571805 GOLGA6BA6NDN3 693 aa25.02■■□□□ 1.6
VPS53-211ENST00000571805 CYP2W1Q8TAV3 490 aa25.02■■□□□ 1.6
VPS53-211ENST00000571805 KIF13BQ9NQT8 1826 aa25.02■■□□□ 1.6
VPS53-211ENST00000571805 FTCDO95954 541 aa25.01■■□□□ 1.59
VPS53-211ENST00000571805 AFPP02771 609 aaKnown RBP25.01■■□□□ 1.59
VPS53-211ENST00000571805 BMT2Q1RMZ1 405 aa25.01■■□□□ 1.59
VPS53-211ENST00000571805 BTNL9Q6UXG8 535 aa25.01■■□□□ 1.59
VPS53-211ENST00000571805 BCAS3Q9H6U6 928 aa25.01■■□□□ 1.59
VPS53-211ENST00000571805 RSPH10B2B2RC85 870 aa25.01■■□□□ 1.59
VPS53-211ENST00000571805 RSPH10BP0C881 870 aa25.01■■□□□ 1.59
VPS53-211ENST00000571805 EPHB4P54760 987 aa25.01■■□□□ 1.59
VPS53-211ENST00000571805 PTK2Q05397 1052 aa25.01■■□□□ 1.59
VPS53-211ENST00000571805 ENOX2Q16206 610 aaKnown RBP25.01■■□□□ 1.59
VPS53-211ENST00000571805 C8orf74Q6P047 294 aa25.01■■□□□ 1.59
VPS53-211ENST00000571805 BTNL10A8MVZ5 291 aa25■■□□□ 1.59
VPS53-211ENST00000571805 CALUO43852 315 aaPredicted RBP25■■□□□ 1.59
VPS53-211ENST00000571805 AKAP3O75969 853 aa25■■□□□ 1.59
VPS53-211ENST00000571805 UCHL3P15374 230 aa25■■□□□ 1.59
VPS53-211ENST00000571805 PON1P27169 355 aa25■■□□□ 1.59
VPS53-211ENST00000571805 LRRC31Q6UY01 552 aa25■■□□□ 1.59
VPS53-211ENST00000571805 GOLGA6L1Q8N7Z2 621 aa25■■□□□ 1.59
VPS53-211ENST00000571805 POLR3CQ9BUI4 534 aaPredicted RBP25■■□□□ 1.59
VPS53-211ENST00000571805 RUSC1Q9BVN2 902 aa25■■□□□ 1.59
VPS53-211ENST00000571805 CYP3A4P08684 503 aa25■■□□□ 1.59
VPS53-211ENST00000571805 BMP3P12645 472 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms