RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PLXNA3P51805 1871 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 MED19A0JLT2 244 aaPredicted RBP12.83□□□□□ -0.36
VPS53-207ENST00000570510 BRD1O95696 1058 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 FGAP02671 866 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 PCP11498 1178 aaKnown RBP12.83□□□□□ -0.36
VPS53-207ENST00000570510 SCG2P13521 617 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 HOXB8P17481 243 aaPredicted RBP12.83□□□□□ -0.36
VPS53-207ENST00000570510 CD52P31358 61 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 HSD17B4P51659 736 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 CLCN5P51795 746 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 PPFIA1Q13136 1202 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 ALX1Q15699 326 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 DUSP6Q16828 381 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 TPRNQ4KMQ1 711 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 FBXO47Q5MNV8 452 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 IER5Q5VY09 327 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 ANKRD54Q6NXT1 300 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 METTL7BQ6UX53 244 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 STOX1Q6ZVD7 989 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 DGKHQ86XP1 1220 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 TRIM50Q86XT4 487 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 ATP8B4Q8TF62 1192 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 DNAJB3Q8WWF6 145 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 ENTPD7Q9NQZ7 604 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 RNF216Q9NWF9 866 aaPredicted RBP12.83□□□□□ -0.36
VPS53-207ENST00000570510 TUBE1Q9UJT0 475 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 SUPT16HQ9Y5B9 1047 aaKnown RBP12.83□□□□□ -0.36
VPS53-207ENST00000570510 PCDHB7Q9Y5E2 793 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 CDY2AQ9Y6F7 541 aa12.83□□□□□ -0.36
VPS53-207ENST00000570510 GCOM1H8Y6P7 765 aaPredicted RBP12.82□□□□□ -0.36
VPS53-207ENST00000570510 FGF18O76093 207 aa12.82□□□□□ -0.36
VPS53-207ENST00000570510 RPLP2P05387 115 aaKnown RBP12.82□□□□□ -0.36
VPS53-207ENST00000570510 POLR2MP0CAP2 368 aa12.82□□□□□ -0.36
VPS53-207ENST00000570510 TRAF1Q13077 416 aa12.82□□□□□ -0.36
VPS53-207ENST00000570510 PAK2Q13177 524 aa12.82□□□□□ -0.36
VPS53-207ENST00000570510 PLPP4Q5VZY2 271 aa12.82□□□□□ -0.36
VPS53-207ENST00000570510 RUFY4Q6ZNE9 571 aa12.82□□□□□ -0.36
VPS53-207ENST00000570510 KIAA2013Q8IYS2 634 aa12.82□□□□□ -0.36
VPS53-207ENST00000570510 SAMD3Q8N6K7 520 aa12.82□□□□□ -0.36
VPS53-207ENST00000570510 GPKOWQ92917 476 aaPredicted RBP eCLIP12.82□□□□□ -0.36
VPS53-207ENST00000570510 RMDN1Q96DB5 314 aa12.82□□□□□ -0.36
VPS53-207ENST00000570510 NECTIN4Q96NY8 510 aa12.82□□□□□ -0.36
VPS53-207ENST00000570510 GPR20Q99678 358 aa12.82□□□□□ -0.36
VPS53-207ENST00000570510 FAM49AQ9H0Q0 323 aaPredicted RBP12.82□□□□□ -0.36
VPS53-207ENST00000570510 JMJD4Q9H9V9 463 aa12.82□□□□□ -0.36
VPS53-207ENST00000570510 ZBTB47Q9UFB7 747 aaPredicted RBP12.82□□□□□ -0.36
VPS53-207ENST00000570510 STK25O00506 426 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 FOXP2O15409 715 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 KRT37O76014 449 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 LMNAP02545 664 aaKnown RBP12.81□□□□□ -0.36
VPS53-207ENST00000570510 RFX1P22670 979 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 CA8P35219 290 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 IGBP1P78318 339 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 MRPS6P82932 125 aaKnown RBP12.81□□□□□ -0.36
VPS53-207ENST00000570510 PUM1Q14671 1186 aaKnown RBP eCLIP12.81□□□□□ -0.36
VPS53-207ENST00000570510 TMEM87AQ8NBN3 555 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 VN1R2Q8NFZ6 395 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 IL31RAQ8NI17 732 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 GLG1Q92896 1179 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 S1PR5Q9H228 398 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 BCAS3Q9H6U6 928 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 HELLSQ9NRZ9 838 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 RTEL1Q9NZ71 1219 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 DMDP11532 3685 aa12.81□□□□□ -0.36
VPS53-207ENST00000570510 ATG2AQ2TAZ0 1938 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 DCHS1Q96JQ0 3298 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 TBKBP1A7MCY6 615 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 C2CD4DB7Z1M9 353 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 FIBPO43427 364 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 STAM2O75886 525 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 MARK3P27448 753 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 GATMP50440 423 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 ERVFC1P60507 584 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 ADAM17P78536 824 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 ANGPT1Q15389 498 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 GRIK4Q16099 956 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 TMEM184AQ6ZMB5 413 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 TDRD5Q8NAT2 981 aaKnown RBP12.8□□□□□ -0.36
VPS53-207ENST00000570510 CASP10Q92851 521 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 TCF25Q9BQ70 676 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 SEMA4AQ9H3S1 761 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 AGO3Q9H9G7 860 aaKnown RBP12.8□□□□□ -0.36
VPS53-207ENST00000570510 LIMD1Q9UGP4 676 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 FBXL21Q9UKT6 434 aa12.8□□□□□ -0.36
VPS53-207ENST00000570510 DENND3A2RUS2 1198 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 ASGR2P07307 311 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 MTHFRP42898 656 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 KRT17Q04695 432 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 ITIH3Q06033 890 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 MGAT3Q09327 533 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 NFX1Q12986 1120 aaKnown RBP12.79□□□□□ -0.36
VPS53-207ENST00000570510 BMS1Q14692 1282 aaKnown RBP12.79□□□□□ -0.36
VPS53-207ENST00000570510 MCMDC2Q4G0Z9 681 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 SYCE2Q6PIF2 218 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 TMC7Q7Z402 723 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 HOMER1Q86YM7 354 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 PLCD3Q8N3E9 789 aa12.79□□□□□ -0.36
VPS53-207ENST00000570510 GIMAP8Q8ND71 665 aaPredicted RBP12.79□□□□□ -0.36
VPS53-207ENST00000570510 TNPO1Q92973 898 aaKnown RBP12.79□□□□□ -0.36
VPS53-207ENST00000570510 RTP3Q9BQQ7 232 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms