RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 Q4G0T1 1027 aa10.96□□□□□ -0.66
VPS53-206ENST00000570359 TAF3Q5VWG9 929 aa10.96□□□□□ -0.66
VPS53-206ENST00000570359 UNC45AQ9H3U1 944 aa10.96□□□□□ -0.66
VPS53-206ENST00000570359 MRPL11Q9Y3B7 192 aaKnown RBP10.96□□□□□ -0.66
VPS53-206ENST00000570359 CYP3A7-CYP3A51PA0A087WV96 503 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 ZNF185O15231 689 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 BUB1O43683 1085 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 CYP3A7P24462 503 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 CYP2J2P51589 502 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 SPA17Q15506 151 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 BTNL9Q6UXG8 535 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 CRYGNQ8WXF5 182 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 TTYH3Q9C0H2 523 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 ARHGAP20Q9P2F6 1191 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 SIK3Q9Y2K2 1263 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 ZNF263O14978 683 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 CXCR5P32302 372 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 PPP1R2P41236 205 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 EHHADHQ08426 723 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 KCTD19Q17RG1 926 aaPredicted RBP10.95□□□□□ -0.66
VPS53-206ENST00000570359 CEP55Q53EZ4 464 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 AGBL3Q8NEM8 1001 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 CAGE1Q8TC20 777 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 DEFB129Q9H1M3 183 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 RANBP17Q9H2T7 1088 aaKnown RBP10.95□□□□□ -0.66
VPS53-206ENST00000570359 JADE2Q9NQC1 790 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 TCEAL9Q9UHQ7 104 aa10.95□□□□□ -0.66
VPS53-206ENST00000570359 CNOT7Q9UIV1 285 aaKnown RBP10.95□□□□□ -0.66
VPS53-206ENST00000570359 TESPA1A2RU30 521 aaPredicted RBP10.94□□□□□ -0.66
VPS53-206ENST00000570359 IPO5O00410 1097 aaKnown RBP10.94□□□□□ -0.66
VPS53-206ENST00000570359 MOCS3O95396 460 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 KIF11P52732 1056 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 PSMD2Q13200 908 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 GJB7Q6PEY0 223 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 OTOP1Q7RTM1 612 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 FAM133AQ8N9E0 248 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 GOLGA1Q92805 767 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 FAM20AQ96MK3 541 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 LXNQ9BS40 222 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 NUP58Q9BVL2 599 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 IFIH1Q9BYX4 1025 aaKnown RBP10.94□□□□□ -0.66
VPS53-206ENST00000570359 PLEKHA4Q9H4M7 779 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 SH2D4AQ9H788 454 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 SMARCAL1Q9NZC9 954 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 PCDHA2Q9Y5H9 948 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 CETN3O15182 167 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 SLITRK3O94933 977 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 MATR3P43243 847 aaKnown RBP eCLIP10.94□□□□□ -0.66
VPS53-206ENST00000570359 KCNMA1Q12791 1236 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 SYT2Q8N9I0 419 aaPredicted RBP10.94□□□□□ -0.66
VPS53-206ENST00000570359 CCDC43Q96MW1 224 aaKnown RBP10.94□□□□□ -0.66
VPS53-206ENST00000570359 ERGIC2Q96RQ1 377 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 WRNIP1Q96S55 665 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 RPAP3Q9H6T3 665 aaPredicted RBP10.94□□□□□ -0.66
VPS53-206ENST00000570359 FEM1BQ9UK73 627 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 EFCAB8A8MWE9 144 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 TISP43B9A030 160 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 ZMYND10O75800 440 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 ITGB5P18084 799 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 SLC9A1P19634 815 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 PRELPP51888 382 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 KCNH2Q12809 1159 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 ZCWPW2Q504Y3 356 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 HYIQ5T013 277 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 ANGEL2Q5VTE6 544 aaKnown RBP10.94□□□□□ -0.66
VPS53-206ENST00000570359 RINT1Q6NUQ1 792 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 TMCO3Q6UWJ1 677 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 NLGN2Q8NFZ4 835 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 TAAR1Q96RJ0 339 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 KCTD10Q9H3F6 313 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 CDC23Q9UJX2 597 aa10.94□□□□□ -0.66
VPS53-206ENST00000570359 ZHX1Q9UKY1 873 aaPredicted RBP10.94□□□□□ -0.66
VPS53-206ENST00000570359 NCK2O43639 380 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 USO1O60763 962 aaKnown RBP10.93□□□□□ -0.66
VPS53-206ENST00000570359 TUBB4AP04350 444 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 HOXD13P35453 343 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 HMGCS2P54868 508 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 KRT83P78385 493 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 KIF5AQ12840 1032 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 NOA1Q8NC60 698 aaKnown RBP10.93□□□□□ -0.66
VPS53-206ENST00000570359 ATG4CQ96DT6 458 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 GDAP1L1Q96MZ0 367 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 MBOAT7Q96N66 472 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 PARD6BQ9BYG5 372 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 PCIF1Q9H4Z3 704 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 EHD2Q9NZN4 543 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 MYH10P35580 1976 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 KRT86O43790 486 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 AKAP3O75969 853 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 VCAM1P19320 739 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 TNIP1Q15025 636 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 KNOP1Q1ED39 458 aaKnown RBP10.93□□□□□ -0.66
VPS53-206ENST00000570359 ODR4Q5SWX8 454 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 MIER3Q7Z3K6 550 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 FAM160B2Q86V87 743 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 TEKT3Q9BXF9 490 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 KCNH7Q9NS40 1196 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 MYO6Q9UM54 1294 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 CAPN6Q9Y6Q1 641 aa10.93□□□□□ -0.66
VPS53-206ENST00000570359 ZNF541Q9H0D2 1346 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms