RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PRLRP16471 622 aa15.83■□□□□ 0.12
VPS35-210ENST00000568784 CYP2J2P51589 502 aa15.83■□□□□ 0.12
VPS35-210ENST00000568784 CDC37Q16543 378 aaPredicted RBP15.83■□□□□ 0.12
VPS35-210ENST00000568784 TBC1D10BQ4KMP7 808 aaPredicted RBP15.83■□□□□ 0.12
VPS35-210ENST00000568784 SFR1Q86XK3 245 aa15.83■□□□□ 0.12
VPS35-210ENST00000568784 TBC1D31Q96DN5 1066 aa15.83■□□□□ 0.12
VPS35-210ENST00000568784 BAIAP2L1Q9UHR4 511 aa15.83■□□□□ 0.12
VPS35-210ENST00000568784 PKD1L3Q7Z443 1732 aa15.83■□□□□ 0.12
VPS35-210ENST00000568784 NUP188Q5SRE5 1749 aa15.82■□□□□ 0.12
VPS35-210ENST00000568784 SHOX2O60902 331 aaPredicted RBP15.82■□□□□ 0.12
VPS35-210ENST00000568784 ECM2O94769 699 aaPredicted RBP15.82■□□□□ 0.12
VPS35-210ENST00000568784 HGSNATQ68CP4 663 aa15.82■□□□□ 0.12
VPS35-210ENST00000568784 CACNA2D3Q8IZS8 1091 aa15.82■□□□□ 0.12
VPS35-210ENST00000568784 NEDD1Q8NHV4 660 aa15.82■□□□□ 0.12
VPS35-210ENST00000568784 SH3GL2Q99962 352 aa15.82■□□□□ 0.12
VPS35-210ENST00000568784 GCNT4Q9P109 453 aa15.82■□□□□ 0.12
VPS35-210ENST00000568784 HMGB1P1B2RPK0 211 aaPredicted RBP15.82■□□□□ 0.12
VPS35-210ENST00000568784 RNF14Q9UBS8 474 aa15.82■□□□□ 0.12
VPS35-210ENST00000568784 PCDHA1Q9Y5I3 950 aa15.82■□□□□ 0.12
VPS35-210ENST00000568784 EPB41P11171 864 aaKnown RBP15.82■□□□□ 0.12
VPS35-210ENST00000568784 PDHBP11177 359 aa15.82■□□□□ 0.12
VPS35-210ENST00000568784 TAL1P17542 331 aaPredicted RBP15.82■□□□□ 0.12
VPS35-210ENST00000568784 CAVIN3Q969G5 261 aa15.82■□□□□ 0.12
VPS35-210ENST00000568784 NT5C3AQ9H0P0 336 aa15.82■□□□□ 0.12
VPS35-210ENST00000568784 PKD2L1Q9P0L9 805 aa15.82■□□□□ 0.12
VPS35-210ENST00000568784 A6NNZ2 444 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 CTNND1O60716 968 aaKnown RBP15.81■□□□□ 0.12
VPS35-210ENST00000568784 TUBB8Q3ZCM7 444 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 CLEC4GQ6UXB4 293 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 ADGRF4Q8IZF3 695 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 METTL13Q8N6R0 699 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 CNBD1Q8NA66 436 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 ZNF219Q9P2Y4 722 aaPredicted RBP15.81■□□□□ 0.12
VPS35-210ENST00000568784 GGT7Q9UJ14 662 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 AMFRQ9UKV5 643 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 DNM3Q9UQ16 869 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 SPDYE3A6NKU9 549 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 M0R2N6 131 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 PPP1R12BO60237 982 aaPredicted RBP15.81■□□□□ 0.12
VPS35-210ENST00000568784 MSL1Q68DK7 614 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 ZNF571Q7Z3V5 609 aaPredicted RBP15.81■□□□□ 0.12
VPS35-210ENST00000568784 GLYCTKQ8IVS8 523 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 CTNNBL1Q8WYA6 563 aaPredicted RBP15.81■□□□□ 0.12
VPS35-210ENST00000568784 AFPP02771 609 aaKnown RBP15.81■□□□□ 0.12
VPS35-210ENST00000568784 RPSAP08865 295 aaKnown RBP15.81■□□□□ 0.12
VPS35-210ENST00000568784 CACNB3P54284 484 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 ZNF662Q6ZS27 426 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 SYCP3Q8IZU3 236 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 LMBR1Q8WVP7 490 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 CYFIP2Q96F07 1278 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 SNX24Q9Y343 169 aa15.81■□□□□ 0.12
VPS35-210ENST00000568784 CHD4Q14839 1912 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 UCHL3P15374 230 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 ADCY1Q08828 1119 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 IQCKQ8N0W5 287 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 PIGOQ8TEQ8 1089 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 BHMT2Q9H2M3 363 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 NF2P35240 595 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 FLT3P36888 993 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 UBXN2AP68543 259 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 PPP1R7Q15435 360 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 KDM7AQ6ZMT4 941 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 PTF1AQ7RTS3 328 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 MYCT1Q8N699 235 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 IKZF4Q9H2S9 585 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 CD2APQ9Y5K6 639 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 LRP6O75581 1613 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 DUOX1Q9NRD9 1551 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 GOLGA6L10A0A0M3HER8 536 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 GMNCA6NCL1 334 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 FAM13AO94988 1023 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 GNA14O95837 355 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 HNRNPH3P31942 346 aaKnown RBP15.8■□□□□ 0.12
VPS35-210ENST00000568784 PSMD2Q13200 908 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 MEI1Q5TIA1 1274 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 PTPN22Q9Y2R2 807 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 ALS2Q96Q42 1657 aa15.8■□□□□ 0.12
VPS35-210ENST00000568784 NOL4O94818 638 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 STAT1P42224 750 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 CASP4P49662 377 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 ZFYVE27Q5T4F4 411 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 PROM2Q8N271 834 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 HAUS2Q9NVX0 235 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 TMOD4Q9NZQ9 345 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 ECM29Q5VYK3 1845 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 RSPH10B2B2RC85 870 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 RSPH10BP0C881 870 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 MYBP10242 640 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 PLCG2P16885 1265 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 CASP5P51878 434 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 GKAP1Q5VSY0 366 aaPredicted RBP15.79■□□□□ 0.12
VPS35-210ENST00000568784 TPH2Q8IWU9 490 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 ERMNQ8TAM6 284 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 SCFD1Q8WVM8 642 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 GDF3Q9NR23 364 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 DNAJC17Q9NVM6 304 aaKnown RBP15.79■□□□□ 0.12
VPS35-210ENST00000568784 CTTNBP2NLQ9P2B4 639 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 CCNL1Q9UK58 526 aaPredicted RBP15.79■□□□□ 0.12
VPS35-210ENST00000568784 TNFAIP3P21580 790 aa15.79■□□□□ 0.12
VPS35-210ENST00000568784 TCP11Q8WWU5 503 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms