RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 DNAJC7Q99615 494 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 ALG1Q9BT22 464 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 TEX13AQ9BXU3 409 aaPredicted RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 RSPH14Q9UHP6 348 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 TRAF6Q9Y4K3 522 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 PCDHB4Q9Y5E5 795 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 NPFFR2Q9Y5X5 522 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 DHX57Q6P158 1386 aaKnown RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 A0A1B0GTL3 188 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 FAM221BA6H8Z2 402 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 H0YHG0 523 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 KRIT1O00522 736 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 CCP110O43303 1012 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 SMARCA5O60264 1052 aaPredicted RBP3.83□□□□□ -1.8
VPS35-208ENST00000568612 MAFKO60675 156 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 SASH1O94885 1247 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 CAPNS1P04632 268 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 FAM153BP0C7A2 387 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 GNAT1P11488 350 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 COL6A2P12110 1019 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 SKILP12757 684 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 GRK2P25098 689 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 GRK3P35626 688 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 RBM5P52756 815 aaKnown RBP eCLIP3.83□□□□□ -1.8
VPS35-208ENST00000568612 SUMO1P63165 101 aaKnown RBP3.83□□□□□ -1.8
VPS35-208ENST00000568612 IRX1P78414 480 aaPredicted RBP3.83□□□□□ -1.8
VPS35-208ENST00000568612 SARNPP82979 210 aaKnown RBP3.83□□□□□ -1.8
VPS35-208ENST00000568612 RBL2Q08999 1139 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 NEXNQ0ZGT2 675 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 RASA3Q14644 834 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 PPP2R5AQ15172 486 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 NTRK3Q16288 839 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 KIZQ2M2Z5 673 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 DNAJC21Q5F1R6 531 aaKnown RBP3.83□□□□□ -1.8
VPS35-208ENST00000568612 FOXB2Q5VYV0 432 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 RSPO2Q6UXX9 243 aaPredicted RBP3.83□□□□□ -1.8
VPS35-208ENST00000568612 DPH6Q7L8W6 267 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 RPAINQ86UA6 219 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 SCUBE1Q8IWY4 988 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 IFNL3Q8IZI9 196 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 Q8N1Y9 231 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 FAM26EQ8N5C1 309 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 ZBTB38Q8NAP3 1195 aaPredicted RBP3.83□□□□□ -1.8
VPS35-208ENST00000568612 FAM184AQ8NB25 1140 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 LSM14AQ8ND56 463 aaKnown RBP3.83□□□□□ -1.8
VPS35-208ENST00000568612 PIP4K2CQ8TBX8 421 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 FNIP1Q8TF40 1166 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 ZNF669Q96BR6 464 aaPredicted RBP3.83□□□□□ -1.8
VPS35-208ENST00000568612 ZBTB8AQ96BR9 441 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 SYT3Q9BQG1 590 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 OSBPL2Q9H1P3 480 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 OGFRQ9NZT2 677 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 MYOTQ9UBF9 498 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 FRMD4BQ9Y2L6 1034 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 CTTNBP2Q8WZ74 1663 aa3.83□□□□□ -1.8
VPS35-208ENST00000568612 UHRF1BP1LA0JNW5 1464 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 CUX2O14529 1486 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 GOLGA6L6A8MZA4 724 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 GOLGA6L22H0YM25 854 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 EXOC5O00471 708 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 FFAR3O14843 346 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 SLC27A2O14975 620 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 ADCY3O60266 1144 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 MARCH6O60337 910 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 TRIM13O60858 407 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 EIF3JO75822 258 aaKnown RBP3.82□□□□□ -1.8
VPS35-208ENST00000568612 SOD2P04179 222 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 C8BP07358 591 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 HSP90AB1P08238 724 aaKnown RBP3.82□□□□□ -1.8
VPS35-208ENST00000568612 FAM200BP0CF97 657 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 SETSIPP0DME0 302 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 CASQ1P31415 396 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 MAGEA8P43361 318 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 INHBEP58166 350 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 RHBDL3P58872 404 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 GPR85P60893 370 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 HMGN5P82970 282 aaKnown RBP3.82□□□□□ -1.8
VPS35-208ENST00000568612 GRIN1Q05586 938 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 CHAF1AQ13111 956 aaPredicted RBP3.82□□□□□ -1.8
VPS35-208ENST00000568612 SERINC3Q13530 473 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 BMS1Q14692 1282 aaKnown RBP3.82□□□□□ -1.8
VPS35-208ENST00000568612 AMOTQ4VCS5 1084 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 MUM1L1Q5H9M0 696 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 CCDC181Q5TID7 509 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 WDR78Q5VTH9 848 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 JAKMIP3Q5VZ66 844 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 STYK1Q6J9G0 422 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 LBX2Q6XYB7 198 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 TTLL7Q6ZT98 887 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 MORC1Q86VD1 984 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 ZDHHC14Q8IZN3 488 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 LINC01356Q8N9X3 169 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 ARRDC4Q8NCT1 418 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.82□□□□□ -1.87e-7■■□□□ 14.2
VPS35-208ENST00000568612 FEZF2Q8TBJ5 459 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.82□□□□□ -1.8
VPS35-208ENST00000568612 CPA5Q8WXQ8 436 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 TNPO1Q92973 898 aaKnown RBP3.82□□□□□ -1.8
VPS35-208ENST00000568612 NOX5Q96PH1 765 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 ARPC5LQ9BPX5 153 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms