RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 TXKP42681 527 aa24.73■■□□□ 1.55
CLN3-234ENST00000568472 FERMT3Q86UX7 667 aa24.73■■□□□ 1.55
CLN3-234ENST00000568472 CCDC60Q8IWA6 550 aaPredicted RBP24.73■■□□□ 1.55
CLN3-234ENST00000568472 SPRYD3Q8NCJ5 442 aa24.73■■□□□ 1.55
CLN3-234ENST00000568472 ATP6V0A1Q93050 837 aa24.73■■□□□ 1.55
CLN3-234ENST00000568472 TMEM60Q9H2L4 133 aa24.73■■□□□ 1.55
CLN3-234ENST00000568472 RNPEPQ9H4A4 650 aa24.73■■□□□ 1.55
CLN3-234ENST00000568472 TMEM39AQ9NV64 488 aa24.73■■□□□ 1.55
CLN3-234ENST00000568472 NOD1Q9Y239 953 aa24.73■■□□□ 1.55
CLN3-234ENST00000568472 PCDHB6Q9Y5E3 794 aa24.73■■□□□ 1.55
CLN3-234ENST00000568472 RRN3P2A6NIE6 340 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 KIAA0355O15063 1070 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 B4GALT4O60513 344 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 SMIM10L2AP0DMW4 78 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 SMIM10L2BP0DMW5 78 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 HOXC8P31273 242 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 PRPHP41219 470 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 RESTQ13127 1097 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 PTGDRQ13258 359 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 EPHA7Q15375 998 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 C4orf32Q8N8J7 132 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 FAM167AQ96KS9 214 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 TRPV6Q9H1D0 765 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 GABBR1Q9UBS5 961 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 CEP131Q9UPN4 1083 aa24.72■■□□□ 1.55
CLN3-234ENST00000568472 POTEB3A0JP26 581 aa24.71■■□□□ 1.55
CLN3-234ENST00000568472 C17orf102A2RUQ5 167 aa24.71■■□□□ 1.55
CLN3-234ENST00000568472 HBP1O60381 514 aa24.71■■□□□ 1.55
CLN3-234ENST00000568472 SPIRE1Q08AE8 756 aa24.71■■□□□ 1.55
CLN3-234ENST00000568472 PTGISQ16647 500 aa24.71■■□□□ 1.55
CLN3-234ENST00000568472 TMEM266Q2M3C6 531 aa24.71■■□□□ 1.55
CLN3-234ENST00000568472 POTEBQ6S5H4 581 aa24.71■■□□□ 1.55
CLN3-234ENST00000568472 ATP8B4Q8TF62 1192 aa24.71■■□□□ 1.55
CLN3-234ENST00000568472 PDLIM7Q9NR12 457 aa24.71■■□□□ 1.55
CLN3-234ENST00000568472 P4HBP07237 508 aaKnown RBP24.7■■□□□ 1.54
CLN3-234ENST00000568472 MARK3P27448 753 aa24.7■■□□□ 1.54
CLN3-234ENST00000568472 PDIA5Q14554 519 aa24.7■■□□□ 1.54
CLN3-234ENST00000568472 NBR1Q14596 966 aa24.7■■□□□ 1.54
CLN3-234ENST00000568472 PLCB4Q15147 1175 aa24.7■■□□□ 1.54
CLN3-234ENST00000568472 GDF6Q6KF10 455 aaPredicted RBP24.7■■□□□ 1.54
CLN3-234ENST00000568472 CKAP2LQ8IYA6 745 aa24.7■■□□□ 1.54
CLN3-234ENST00000568472 BBXQ8WY36 941 aaPredicted RBP24.7■■□□□ 1.54
CLN3-234ENST00000568472 RAB34Q9BZG1 259 aa24.7■■□□□ 1.54
CLN3-234ENST00000568472 NRBP2Q9NSY0 501 aa24.7■■□□□ 1.54
CLN3-234ENST00000568472 TRMT13Q9NUP7 481 aaKnown RBP24.7■■□□□ 1.54
CLN3-234ENST00000568472 TBX21Q9UL17 535 aa24.7■■□□□ 1.54
CLN3-234ENST00000568472 TRPC6Q9Y210 931 aa24.7■■□□□ 1.54
CLN3-234ENST00000568472 STK24Q9Y6E0 443 aa24.7■■□□□ 1.54
CLN3-234ENST00000568472 IGSF9BQ9UPX0 1349 aa24.69■■□□□ 1.54
CLN3-234ENST00000568472 ZSCAN22P10073 491 aaPredicted RBP24.69■■□□□ 1.54
CLN3-234ENST00000568472 QARSP47897 775 aaKnown RBP24.69■■□□□ 1.54
CLN3-234ENST00000568472 PSMC5P62195 406 aa24.69■■□□□ 1.54
CLN3-234ENST00000568472 PPFIA1Q13136 1202 aa24.69■■□□□ 1.54
CLN3-234ENST00000568472 ARL6IP4Q66PJ3 421 aaKnown RBP24.69■■□□□ 1.54
CLN3-234ENST00000568472 NCAPH2Q6IBW4 605 aa24.69■■□□□ 1.54
CLN3-234ENST00000568472 CCDC155Q8N6L0 562 aa24.69■■□□□ 1.54
CLN3-234ENST00000568472 NEK9Q8TD19 979 aa24.69■■□□□ 1.54
CLN3-234ENST00000568472 PRDM5Q9NQX1 630 aaPredicted RBP24.69■■□□□ 1.54
CLN3-234ENST00000568472 DOCK5Q9H7D0 1870 aa24.68■■□□□ 1.54
CLN3-234ENST00000568472 EML1O00423 815 aa24.68■■□□□ 1.54
CLN3-234ENST00000568472 FXR2P51116 673 aaKnown RBP eCLIP24.68■■□□□ 1.54
CLN3-234ENST00000568472 ATP2C1P98194 919 aaPredicted RBP24.68■■□□□ 1.54
CLN3-234ENST00000568472 PTK7Q13308 1070 aa24.68■■□□□ 1.54
CLN3-234ENST00000568472 ZNF484Q5JVG2 852 aa24.68■■□□□ 1.54
CLN3-234ENST00000568472 SETD4Q9NVD3 440 aa24.68■■□□□ 1.54
CLN3-234ENST00000568472 COL1A2P08123 1366 aa24.67■■□□□ 1.54
CLN3-234ENST00000568472 RPLP2P05387 115 aaKnown RBP24.67■■□□□ 1.54
CLN3-234ENST00000568472 INSRRP14616 1297 aa24.67■■□□□ 1.54
CLN3-234ENST00000568472 RAG1P15918 1043 aa24.67■■□□□ 1.54
CLN3-234ENST00000568472 ANP32AP39687 249 aaKnown RBP24.67■■□□□ 1.54
CLN3-234ENST00000568472 TECP42680 631 aa24.67■■□□□ 1.54
CLN3-234ENST00000568472 ADAM17P78536 824 aa24.67■■□□□ 1.54
CLN3-234ENST00000568472 BFSP2Q13515 415 aa24.67■■□□□ 1.54
CLN3-234ENST00000568472 GRIK4Q16099 956 aa24.67■■□□□ 1.54
CLN3-234ENST00000568472 XKR3Q5GH77 459 aa24.67■■□□□ 1.54
CLN3-234ENST00000568472 DTHD1Q6ZMT9 781 aa24.67■■□□□ 1.54
CLN3-234ENST00000568472 ERMNQ8TAM6 284 aa24.67■■□□□ 1.54
CLN3-234ENST00000568472 CAGE1Q8TC20 777 aa24.67■■□□□ 1.54
CLN3-234ENST00000568472 LMBR1Q8WVP7 490 aa24.67■■□□□ 1.54
CLN3-234ENST00000568472 DNAH12Q6ZR08 3092 aa24.66■■□□□ 1.54
CLN3-234ENST00000568472 TRIM43BA6NCK2 446 aa24.66■■□□□ 1.54
CLN3-234ENST00000568472 H0YGN5 161 aa24.66■■□□□ 1.54
CLN3-234ENST00000568472 TIMP1P01033 207 aa24.66■■□□□ 1.54
CLN3-234ENST00000568472 OATP04181 439 aa24.66■■□□□ 1.54
CLN3-234ENST00000568472 ATP4AP20648 1035 aa24.66■■□□□ 1.54
CLN3-234ENST00000568472 SERINC5Q86VE9 423 aa24.66■■□□□ 1.54
CLN3-234ENST00000568472 PPP1R13LQ8WUF5 828 aa24.66■■□□□ 1.54
CLN3-234ENST00000568472 TRIM43Q96BQ3 446 aaPredicted RBP24.66■■□□□ 1.54
CLN3-234ENST00000568472 HSD17B14Q9BPX1 270 aa24.66■■□□□ 1.54
CLN3-234ENST00000568472 LBHD1Q9BQE6 289 aaPredicted RBP24.66■■□□□ 1.54
CLN3-234ENST00000568472 HIPK3Q9H422 1215 aa24.66■■□□□ 1.54
CLN3-234ENST00000568472 ZSWIM4Q9H7M6 989 aa24.66■■□□□ 1.54
CLN3-234ENST00000568472 DAXXQ9UER7 740 aaPredicted RBP24.66■■□□□ 1.54
CLN3-234ENST00000568472 ZMYND8Q9ULU4 1186 aaPredicted RBP24.66■■□□□ 1.54
CLN3-234ENST00000568472 MBLAC1A4D2B0 266 aaPredicted RBP24.65■■□□□ 1.54
CLN3-234ENST00000568472 PITPNM1O00562 1244 aa24.65■■□□□ 1.54
CLN3-234ENST00000568472 ZNF862O60290 1169 aa24.65■■□□□ 1.54
CLN3-234ENST00000568472 PRKCEQ02156 737 aa24.65■■□□□ 1.54
CLN3-234ENST00000568472 TAF2Q6P1X5 1199 aa24.65■■□□□ 1.54
CLN3-234ENST00000568472 SH3RF1Q7Z6J0 888 aa24.65■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms