RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 NSUN7Q8NE18 718 aaKnown RBP17.08■□□□□ 0.32
VPS39-210ENST00000568357 TBCKQ8TEA7 893 aa17.08■□□□□ 0.32
VPS39-210ENST00000568357 ZNF577Q9BSK1 485 aa17.08■□□□□ 0.32
VPS39-210ENST00000568357 ERAP1Q9NZ08 941 aa17.08■□□□□ 0.32
VPS39-210ENST00000568357 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.07■□□□□ 0.32
VPS39-210ENST00000568357 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.07■□□□□ 0.32
VPS39-210ENST00000568357 GRXCR1A8MXD5 290 aa17.07■□□□□ 0.32
VPS39-210ENST00000568357 RFC2P35250 354 aa17.07■□□□□ 0.32
VPS39-210ENST00000568357 RBM25P49756 843 aaKnown RBP17.07■□□□□ 0.32
VPS39-210ENST00000568357 ABHD15Q6UXT9 468 aa17.07■□□□□ 0.32
VPS39-210ENST00000568357 LRRC8DQ7L1W4 858 aa17.07■□□□□ 0.32
VPS39-210ENST00000568357 OXER1Q8TDS5 423 aa17.07■□□□□ 0.32
VPS39-210ENST00000568357 LMBR1Q8WVP7 490 aa17.07■□□□□ 0.32
VPS39-210ENST00000568357 THEGQ9P2T0 379 aa17.07■□□□□ 0.32
VPS39-210ENST00000568357 LIMCH1Q9UPQ0 1083 aa17.07■□□□□ 0.32
VPS39-210ENST00000568357 DOCK5Q9H7D0 1870 aa17.07■□□□□ 0.32
VPS39-210ENST00000568357 EMSYQ7Z589 1322 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 NRCAMQ92823 1304 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 IGKV6D-21A0A0A0MT36 114 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 JAK2O60674 1132 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 NBNO60934 754 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 PFKMP08237 780 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 GNAT1P11488 350 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 THPOP40225 353 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 STAT5BP51692 787 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 SETQ01105 290 aaPredicted RBP17.06■□□□□ 0.32
VPS39-210ENST00000568357 MBTPS1Q14703 1052 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 ATXN2LQ8WWM7 1075 aaKnown RBP17.06■□□□□ 0.32
VPS39-210ENST00000568357 ASB2Q96Q27 587 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 UHRF1Q96T88 793 aaPredicted RBP17.06■□□□□ 0.32
VPS39-210ENST00000568357 ZNF576Q9H609 170 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 TBC1D22BQ9NU19 505 aa17.06■□□□□ 0.32
VPS39-210ENST00000568357 CYP3A7-CYP3A51PA0A087WV96 503 aa17.05■□□□□ 0.32
VPS39-210ENST00000568357 MSH4O15457 936 aa17.05■□□□□ 0.32
VPS39-210ENST00000568357 XBP1P17861 261 aa17.05■□□□□ 0.32
VPS39-210ENST00000568357 CYP3A7P24462 503 aa17.05■□□□□ 0.32
VPS39-210ENST00000568357 PPFIA1Q13136 1202 aa17.05■□□□□ 0.32
VPS39-210ENST00000568357 INF2Q27J81 1249 aa17.05■□□□□ 0.32
VPS39-210ENST00000568357 MARCH8Q5T0T0 291 aa17.05■□□□□ 0.32
VPS39-210ENST00000568357 PLPPR4Q7Z2D5 763 aa17.05■□□□□ 0.32
VPS39-210ENST00000568357 WASF1Q92558 559 aa17.05■□□□□ 0.32
VPS39-210ENST00000568357 GJA10Q969M2 543 aa17.05■□□□□ 0.32
VPS39-210ENST00000568357 FTOQ9C0B1 505 aaKnown RBP eCLIP17.05■□□□□ 0.32
VPS39-210ENST00000568357 AZI2Q9H6S1 392 aa17.05■□□□□ 0.32
VPS39-210ENST00000568357 TCF20Q9UGU0 1960 aaKnown RBP17.05■□□□□ 0.32
VPS39-210ENST00000568357 TDP2O95551 362 aa17.04■□□□□ 0.32
VPS39-210ENST00000568357 INSRRP14616 1297 aa17.04■□□□□ 0.32
VPS39-210ENST00000568357 PBX2P40425 430 aa17.04■□□□□ 0.32
VPS39-210ENST00000568357 PLCB4Q15147 1175 aa17.04■□□□□ 0.32
VPS39-210ENST00000568357 NONOQ15233 471 aaKnown RBP eCLIP17.04■□□□□ 0.32
VPS39-210ENST00000568357 GRIK4Q16099 956 aa17.04■□□□□ 0.32
VPS39-210ENST00000568357 TCTN1Q2MV58 587 aa17.04■□□□□ 0.32
VPS39-210ENST00000568357 SWSAP1Q6NVH7 229 aa17.04■□□□□ 0.32
VPS39-210ENST00000568357 KRT25Q7Z3Z0 450 aa17.04■□□□□ 0.32
VPS39-210ENST00000568357 OSBPL7Q9BZF2 842 aa17.04■□□□□ 0.32
VPS39-210ENST00000568357 ZBBXA8MT70 800 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 RSPH10B2B2RC85 870 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 CXCL10P02778 98 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 RSPH10BP0C881 870 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 IGBP1P78318 339 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 Q4G0T1 1027 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 EARS2Q5JPH6 523 aaKnown RBP17.03■□□□□ 0.32
VPS39-210ENST00000568357 ZNF746Q6NUN9 644 aaPredicted RBP17.03■□□□□ 0.32
VPS39-210ENST00000568357 MIS18BP1Q6P0N0 1132 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 RUFY4Q6ZNE9 571 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 CCDC60Q8IWA6 550 aaPredicted RBP17.03■□□□□ 0.32
VPS39-210ENST00000568357 CCDC83Q8IWF9 413 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 SLC5A5Q92911 643 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 TIFAQ96CG3 184 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 ZBTB10Q96DT7 871 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 MBOAT7Q96N66 472 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 PBX4Q9BYU1 374 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 MTIF3Q9H2K0 278 aaKnown RBP17.03■□□□□ 0.32
VPS39-210ENST00000568357 SLC4A7Q9Y6M7 1214 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 GBF1Q92538 1859 aa17.03■□□□□ 0.32
VPS39-210ENST00000568357 CCDC194A0A1B0GVG4 234 aa17.02■□□□□ 0.32
VPS39-210ENST00000568357 MBLAC1A4D2B0 266 aaPredicted RBP17.02■□□□□ 0.32
VPS39-210ENST00000568357 BACH1O14867 736 aa17.02■□□□□ 0.32
VPS39-210ENST00000568357 PARNO95453 639 aaKnown RBP17.02■□□□□ 0.32
VPS39-210ENST00000568357 ACTN1P12814 892 aa17.02■□□□□ 0.32
VPS39-210ENST00000568357 ATP4AP20648 1035 aa17.02■□□□□ 0.32
VPS39-210ENST00000568357 NR5A1Q13285 461 aa17.02■□□□□ 0.32
VPS39-210ENST00000568357 PIK3AP1Q6ZUJ8 805 aa17.02■□□□□ 0.32
VPS39-210ENST00000568357 TRAPPC12Q8WVT3 735 aa17.02■□□□□ 0.32
VPS39-210ENST00000568357 NECAB3Q96P71 396 aaPredicted RBP17.02■□□□□ 0.32
VPS39-210ENST00000568357 ZNF302Q9NR11 478 aa17.02■□□□□ 0.32
VPS39-210ENST00000568357 TRPC6Q9Y210 931 aa17.02■□□□□ 0.32
VPS39-210ENST00000568357 PCDHA10Q9Y5I2 948 aa17.02■□□□□ 0.32
VPS39-210ENST00000568357 POTEB3A0JP26 581 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 FAM205CA6NFA0 338 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 RRN3P2A6NIE6 340 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 CTSHP09668 335 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 FOSBP53539 338 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 RABGGTBP53611 331 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 KRT76Q01546 638 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 LETM2Q2VYF4 491 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 FAM160B1Q5W0V3 765 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 POTEBQ6S5H4 581 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 MOXD1Q6UVY6 613 aa17.01■□□□□ 0.31
VPS39-210ENST00000568357 SMAP1Q8IYB5 467 aaPredicted RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms