RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 MYO10Q9HD67 2058 aa19.5■□□□□ 0.71
CDH3-205ENST00000566808 A0A0D9SFI3 127 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 TRIM6-TRIM34B2RNG4 842 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 STAM2O75886 525 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 MCMDC2Q4G0Z9 681 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 PAN2Q504Q3 1202 aaKnown RBP19.49■□□□□ 0.71
CDH3-205ENST00000566808 RUFY4Q6ZNE9 571 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 CYFIP1Q7L576 1253 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 UBALD2Q8IYN6 164 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 VN1R2Q8NFZ6 395 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 NKD2Q969F2 451 aaPredicted RBP19.49■□□□□ 0.71
CDH3-205ENST00000566808 EVI5LQ96CN4 794 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 INPP4AQ96PE3 977 aaPredicted RBP19.49■□□□□ 0.71
CDH3-205ENST00000566808 BCAS3Q9H6U6 928 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 VAT1LQ9HCJ6 419 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 SUPT16HQ9Y5B9 1047 aaKnown RBP19.49■□□□□ 0.71
CDH3-205ENST00000566808 PCDHGC5Q9Y5F6 944 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 FRYLO94915 3013 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 FRMPD4Q14CM0 1322 aa19.49■□□□□ 0.71
CDH3-205ENST00000566808 RPLP2P05387 115 aaKnown RBP19.48■□□□□ 0.71
CDH3-205ENST00000566808 STAG3L1P0CL83 205 aa19.48■□□□□ 0.71
CDH3-205ENST00000566808 MTMR3Q13615 1198 aa19.48■□□□□ 0.71
CDH3-205ENST00000566808 DUSP6Q16828 381 aa19.48■□□□□ 0.71
CDH3-205ENST00000566808 FAM227BQ96M60 508 aa19.48■□□□□ 0.71
CDH3-205ENST00000566808 TUBE1Q9UJT0 475 aa19.48■□□□□ 0.71
CDH3-205ENST00000566808 CEP250Q9BV73 2442 aa19.48■□□□□ 0.71
CDH3-205ENST00000566808 TPRP12270 2363 aaKnown RBP19.48■□□□□ 0.71
CDH3-205ENST00000566808 FIBPO43427 364 aa19.47■□□□□ 0.71
CDH3-205ENST00000566808 PPP1R11O60927 126 aaPredicted RBP19.47■□□□□ 0.71
CDH3-205ENST00000566808 RBM10P98175 930 aaKnown RBP19.47■□□□□ 0.71
CDH3-205ENST00000566808 PPFIA1Q13136 1202 aa19.47■□□□□ 0.71
CDH3-205ENST00000566808 UTP14CQ5TAP6 766 aaKnown RBP19.47■□□□□ 0.71
CDH3-205ENST00000566808 ZNF589Q86UQ0 364 aaPredicted RBP19.47■□□□□ 0.71
CDH3-205ENST00000566808 TMEM105Q8N8V8 129 aa19.47■□□□□ 0.71
CDH3-205ENST00000566808 KREMEN2Q8NCW0 462 aa19.47■□□□□ 0.71
CDH3-205ENST00000566808 MTMR8Q96EF0 704 aa19.47■□□□□ 0.71
CDH3-205ENST00000566808 ZFP91Q96JP5 570 aaPredicted RBP19.47■□□□□ 0.71
CDH3-205ENST00000566808 SORCS3Q9UPU3 1222 aa19.47■□□□□ 0.71
CDH3-205ENST00000566808 PCDHA1Q9Y5I3 950 aa19.47■□□□□ 0.71
CDH3-205ENST00000566808 CDY2AQ9Y6F7 541 aa19.47■□□□□ 0.71
CDH3-205ENST00000566808 SALL3Q9BXA9 1300 aa19.47■□□□□ 0.71
CDH3-205ENST00000566808 BAZ2BQ9UIF8 2168 aaKnown RBP19.46■□□□□ 0.71
CDH3-205ENST00000566808 SPATA31C2B4DYI2 1134 aa19.46■□□□□ 0.71
CDH3-205ENST00000566808 GCOM1H8Y6P7 765 aaPredicted RBP19.46■□□□□ 0.71
CDH3-205ENST00000566808 PER2O15055 1255 aa19.46■□□□□ 0.71
CDH3-205ENST00000566808 ZBTB5O15062 677 aa19.46■□□□□ 0.71
CDH3-205ENST00000566808 POLR2MP0CAP2 368 aa19.46■□□□□ 0.71
CDH3-205ENST00000566808 SEMA3FQ13275 785 aa19.46■□□□□ 0.71
CDH3-205ENST00000566808 PDE12Q6L8Q7 609 aaKnown RBP19.46■□□□□ 0.71
CDH3-205ENST00000566808 TICAM2Q86XR7 235 aa19.46■□□□□ 0.71
CDH3-205ENST00000566808 ENAHQ8N8S7 591 aaPredicted RBP19.46■□□□□ 0.71
CDH3-205ENST00000566808 MICAL1Q8TDZ2 1067 aa19.46■□□□□ 0.71
CDH3-205ENST00000566808 AGO3Q9H9G7 860 aaKnown RBP19.46■□□□□ 0.71
CDH3-205ENST00000566808 NR2E1Q9Y466 385 aa19.46■□□□□ 0.71
CDH3-205ENST00000566808 SQORQ9Y6N5 450 aa19.46■□□□□ 0.71
CDH3-205ENST00000566808 DNAH14Q0VDD8 3507 aa19.46■□□□□ 0.71
CDH3-205ENST00000566808 KMT2BQ9UMN6 2715 aaPredicted RBP19.45■□□□□ 0.7
CDH3-205ENST00000566808 MBLAC1A4D2B0 266 aaPredicted RBP19.45■□□□□ 0.7
CDH3-205ENST00000566808 SCG2P13521 617 aa19.45■□□□□ 0.7
CDH3-205ENST00000566808 CD52P31358 61 aa19.45■□□□□ 0.7
CDH3-205ENST00000566808 MRPS6P82932 125 aaKnown RBP19.45■□□□□ 0.7
CDH3-205ENST00000566808 MRPS9P82933 396 aaKnown RBP19.45■□□□□ 0.7
CDH3-205ENST00000566808 TRAF1Q13077 416 aa19.45■□□□□ 0.7
CDH3-205ENST00000566808 TMEM184AQ6ZMB5 413 aa19.45■□□□□ 0.7
CDH3-205ENST00000566808 FRMD5Q7Z6J6 570 aa19.45■□□□□ 0.7
CDH3-205ENST00000566808 FCHSD1Q86WN1 690 aa19.45■□□□□ 0.7
CDH3-205ENST00000566808 ADSSL1Q8N142 457 aa19.45■□□□□ 0.7
CDH3-205ENST00000566808 DNAJB3Q8WWF6 145 aa19.45■□□□□ 0.7
CDH3-205ENST00000566808 ZSCAN10Q96SZ4 725 aaPredicted RBP19.45■□□□□ 0.7
CDH3-205ENST00000566808 PCDHB12Q9Y5F1 795 aa19.45■□□□□ 0.7
CDH3-205ENST00000566808 GRIK4Q16099 956 aa19.44■□□□□ 0.7
CDH3-205ENST00000566808 C20orf194Q5TEA3 1177 aa19.44■□□□□ 0.7
CDH3-205ENST00000566808 ANKRD54Q6NXT1 300 aa19.44■□□□□ 0.7
CDH3-205ENST00000566808 SENP7Q9BQF6 1050 aa19.44■□□□□ 0.7
CDH3-205ENST00000566808 S1PR5Q9H228 398 aa19.44■□□□□ 0.7
CDH3-205ENST00000566808 AAASQ9NRG9 546 aa19.44■□□□□ 0.7
CDH3-205ENST00000566808 PPFIA3O75145 1194 aa19.43■□□□□ 0.7
CDH3-205ENST00000566808 HOXB8P17481 243 aaPredicted RBP19.43■□□□□ 0.7
CDH3-205ENST00000566808 SP100P23497 879 aaPredicted RBP19.43■□□□□ 0.7
CDH3-205ENST00000566808 SP4Q02446 784 aa19.43■□□□□ 0.7
CDH3-205ENST00000566808 KCNC3Q14003 757 aa19.43■□□□□ 0.7
CDH3-205ENST00000566808 ASTLQ6HA08 431 aaPredicted RBP19.43■□□□□ 0.7
CDH3-205ENST00000566808 STAG2Q8N3U4 1231 aa19.43■□□□□ 0.7
CDH3-205ENST00000566808 RASGRP4Q8TDF6 673 aa19.43■□□□□ 0.7
CDH3-205ENST00000566808 ACACBO00763 2458 aa19.43■□□□□ 0.7
CDH3-205ENST00000566808 KLRF2D3W0D1 207 aa19.42■□□□□ 0.7
CDH3-205ENST00000566808 ZNF213O14771 459 aa19.42■□□□□ 0.7
CDH3-205ENST00000566808 BRD1O95696 1058 aa19.42■□□□□ 0.7
CDH3-205ENST00000566808 TCF7P36402 384 aaPredicted RBP19.42■□□□□ 0.7
CDH3-205ENST00000566808 TECP42680 631 aa19.42■□□□□ 0.7
CDH3-205ENST00000566808 GATMP50440 423 aa19.42■□□□□ 0.7
CDH3-205ENST00000566808 PAK2Q13177 524 aa19.42■□□□□ 0.7
CDH3-205ENST00000566808 IER5Q5VY09 327 aa19.42■□□□□ 0.7
CDH3-205ENST00000566808 RTN4RL1Q86UN2 441 aaPredicted RBP19.42■□□□□ 0.7
CDH3-205ENST00000566808 GIMAP8Q8ND71 665 aaPredicted RBP19.42■□□□□ 0.7
CDH3-205ENST00000566808 TSHZ2Q9NRE2 1034 aa19.42■□□□□ 0.7
CDH3-205ENST00000566808 ERAP1Q9NZ08 941 aa19.42■□□□□ 0.7
CDH3-205ENST00000566808 LRFN2Q9ULH4 789 aa19.42■□□□□ 0.7
CDH3-205ENST00000566808 TELO2Q9Y4R8 837 aa19.42■□□□□ 0.7
CDH3-205ENST00000566808 IGSF9BQ9UPX0 1349 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms