RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PRR23AA6NEV1 266 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 PROB1E7EW31 1015 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 ZNF213O14771 459 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 GALR2O43603 387 aaPredicted RBP8.48□□□□□ -1.05
VPS4A-203ENST00000564399 STAG3L1P0CL83 205 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 SP100P23497 879 aaPredicted RBP8.48□□□□□ -1.05
VPS4A-203ENST00000564399 NUBP1P53384 320 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 ADAM17P78536 824 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 RBM10P98175 930 aaKnown RBP8.48□□□□□ -1.05
VPS4A-203ENST00000564399 GHRHRQ02643 423 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 FBXO47Q5MNV8 452 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 SPOUT1Q5T280 376 aaKnown RBP8.48□□□□□ -1.05
VPS4A-203ENST00000564399 RUFY4Q6ZNE9 571 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 TSHZ1Q6ZSZ6 1077 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 ERMP1Q7Z2K6 904 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 ZNF589Q86UQ0 364 aaPredicted RBP8.48□□□□□ -1.05
VPS4A-203ENST00000564399 SAMD3Q8N6K7 520 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 DNAJB3Q8WWF6 145 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 RIPOR3Q96MK2 946 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 NEK1Q96PY6 1258 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 ZSCAN10Q96SZ4 725 aaPredicted RBP8.48□□□□□ -1.05
VPS4A-203ENST00000564399 RTEL1Q9NZ71 1219 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 RCAN3Q9UKA8 241 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 LRFN2Q9ULH4 789 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 CDY2AQ9Y6F7 541 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 ZMYM6O95789 1325 aa8.48□□□□□ -1.05
VPS4A-203ENST00000564399 SPTBN2O15020 2390 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 B4E1Z4 1266 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 KLRF2D3W0D1 207 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 ZBTB5O15062 677 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 PPP1R11O60927 126 aaPredicted RBP8.47□□□□□ -1.05
VPS4A-203ENST00000564399 SRGAP2BP0DMP2 458 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 CD52P31358 61 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 ID4P47928 161 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 MGAT3Q09327 533 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 TRAF1Q13077 416 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 PPFIA1Q13136 1202 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 NMIQ13287 307 aaPredicted RBP8.47□□□□□ -1.05
VPS4A-203ENST00000564399 HOMER1Q86YM7 354 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 NPAS4Q8IUM7 802 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 STAG2Q8N3U4 1231 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 ENAHQ8N8S7 591 aaPredicted RBP8.47□□□□□ -1.05
VPS4A-203ENST00000564399 SUSD6Q92537 303 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 NKD2Q969F2 451 aaPredicted RBP8.47□□□□□ -1.05
VPS4A-203ENST00000564399 APOL5Q9BWW9 433 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 FTHL17Q9BXU8 183 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 FAM49AQ9H0Q0 323 aaPredicted RBP8.47□□□□□ -1.05
VPS4A-203ENST00000564399 AGO3Q9H9G7 860 aaKnown RBP8.47□□□□□ -1.05
VPS4A-203ENST00000564399 TSHZ2Q9NRE2 1034 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 TUBE1Q9UJT0 475 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 PCDHB12Q9Y5F1 795 aa8.47□□□□□ -1.05
VPS4A-203ENST00000564399 FNDC1Q4ZHG4 1894 aaPredicted RBP8.47□□□□□ -1.05
VPS4A-203ENST00000564399 EVPLQ92817 2033 aa8.46□□□□□ -1.05
VPS4A-203ENST00000564399 FSD2A1L4K1 749 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 SPATA31C2B4DYI2 1134 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 M0QZ92 97 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 FIBPO43427 364 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 STAM2O75886 525 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 SCG2P13521 617 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 MARK3P27448 753 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 TCF7P36402 384 aaPredicted RBP8.46□□□□□ -1.06
VPS4A-203ENST00000564399 NBL1P41271 181 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 TECP42680 631 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 NT5C2P49902 561 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 GATMP50440 423 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 MFAP1P55081 439 aaKnown RBP8.46□□□□□ -1.06
VPS4A-203ENST00000564399 IGBP1P78318 339 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 MRPS6P82932 125 aaKnown RBP8.46□□□□□ -1.06
VPS4A-203ENST00000564399 MRPS9P82933 396 aaKnown RBP8.46□□□□□ -1.06
VPS4A-203ENST00000564399 SEMA3FQ13275 785 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 GRIK4Q16099 956 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 RTN4RL1Q86UN2 441 aaPredicted RBP8.46□□□□□ -1.06
VPS4A-203ENST00000564399 THNSL1Q8IYQ7 743 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 ADSSL1Q8N142 457 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 KREMEN2Q8NCW0 462 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 ATP8B4Q8TF62 1192 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 LINC01599Q8WXQ3 324 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 GLG1Q92896 1179 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 INPP4AQ96PE3 977 aaPredicted RBP8.46□□□□□ -1.06
VPS4A-203ENST00000564399 CDCA3Q99618 268 aaPredicted RBP8.46□□□□□ -1.06
VPS4A-203ENST00000564399 UBAC1Q9BSL1 405 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 AAASQ9NRG9 546 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 TELO2Q9Y4R8 837 aa8.46□□□□□ -1.06
VPS4A-203ENST00000564399 CEP250Q9BV73 2442 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 UBE3AQ05086 875 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 PAK2Q13177 524 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 MTMR3Q13615 1198 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 DUSP6Q16828 381 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 IFIT1BQ5T764 474 aaKnown RBP8.45□□□□□ -1.06
VPS4A-203ENST00000564399 ANKRD45Q5TZF3 282 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 IER5Q5VY09 327 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 ANKRD54Q6NXT1 300 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 LLGL2Q6P1M3 1020 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 FRMD5Q7Z6J6 570 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 NLRX1Q86UT6 975 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 UBALD2Q8IYN6 164 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 TMEM105Q8N8V8 129 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 VN1R2Q8NFZ6 395 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 RILPL2Q969X0 211 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 MTMR8Q96EF0 704 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms