RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 KRT12Q99456 494 aa14.84□□□□□ -0.03
CLK3-215ENST00000564353 FAM153AQ9UHL3 310 aa14.84□□□□□ -0.03
CLK3-215ENST00000564353 NFU1Q9UMS0 254 aa14.84□□□□□ -0.03
CLK3-215ENST00000564353 PCDHA2Q9Y5H9 948 aa14.84□□□□□ -0.03
CLK3-215ENST00000564353 ADAMTSL1Q8N6G6 1762 aa14.84□□□□□ -0.03
CLK3-215ENST00000564353 F5H6K3 240 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 ZNF76P36508 570 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 PPP1R2P41236 205 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 PAFAH1B1P43034 410 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 CARSP49589 748 aaKnown RBP14.83□□□□□ -0.04
CLK3-215ENST00000564353 GUCY2DQ02846 1103 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 KLRC3Q07444 240 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 LRRC31Q6UY01 552 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 SP8Q8IXZ3 490 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 GOLGA5Q8TBA6 731 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 ACBD3Q9H3P7 528 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 ATF5Q9Y2D1 282 aaPredicted RBP14.83□□□□□ -0.04
CLK3-215ENST00000564353 CDK17Q00537 523 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 PTK2Q05397 1052 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 ZC2HC1CQ53FD0 456 aaPredicted RBP14.83□□□□□ -0.04
CLK3-215ENST00000564353 SPAG5Q96R06 1193 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 SH2D3AQ9BRG2 576 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 RUSC1Q9BVN2 902 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 DHX36Q9H2U1 1008 aaKnown RBP14.83□□□□□ -0.04
CLK3-215ENST00000564353 KCTD10Q9H3F6 313 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 FAM198AQ9UFP1 575 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 HDAC9Q9UKV0 1011 aa14.83□□□□□ -0.04
CLK3-215ENST00000564353 CDK5RAP2Q96SN8 1893 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 EML1O00423 815 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 GCNT3O95395 438 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 GH2P01242 217 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 KRT14P02533 472 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 HOXA10P31260 410 aaPredicted RBP14.82□□□□□ -0.04
CLK3-215ENST00000564353 HOXD13P35453 343 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 ECE1P42892 770 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 RRP1BQ14684 758 aaKnown RBP14.82□□□□□ -0.04
CLK3-215ENST00000564353 CCDC70Q6NSX1 233 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 CCDC174Q6PII3 467 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 TRIM59Q8IWR1 403 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 RDH13Q8NBN7 331 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 EPB41L5Q9HCM4 733 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 CEP72Q9P209 647 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 LY75O60449 1722 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 AKAP3O75969 853 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 CFBP00751 764 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 ATP1A2P50993 1020 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 SLC12A3P55017 1021 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 COG2Q14746 738 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 ARL8AQ96BM9 186 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 CRAMP1Q96RY5 1269 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 AP1M1Q9BXS5 423 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 NT5C3AQ9H0P0 336 aa14.82□□□□□ -0.04
CLK3-215ENST00000564353 SPDYE3A6NKU9 549 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 hCG_1984214I3L0E3 225 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 NDUFB10O96000 172 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 TUBB4BP68371 445 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 PSMD2Q13200 908 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 GIT2Q14161 759 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 ASIC2Q16515 512 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 TPH2Q8IWU9 490 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 ZNF713Q8N859 430 aaPredicted RBP14.81□□□□□ -0.04
CLK3-215ENST00000564353 SWAP70Q9UH65 585 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 GOLGA6CA6NDK9 693 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 CETN3O15182 167 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 SERPING1P05155 500 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 MMP10P09238 476 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 GOLGA6DP0CG33 693 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 SPATA31C1P0DKV0 1188 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 NMT1P30419 496 aaKnown RBP14.81□□□□□ -0.04
CLK3-215ENST00000564353 COBLL1Q53SF7 1204 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 ZNF571Q7Z3V5 609 aaPredicted RBP14.81□□□□□ -0.04
CLK3-215ENST00000564353 AENQ8WTP8 325 aaKnown RBP14.81□□□□□ -0.04
CLK3-215ENST00000564353 CNKSR2Q8WXI2 1034 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 KCNMB3Q9NPA1 279 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 MED4Q9NPJ6 270 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 GOLGA6AQ9NYA3 693 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 FAM184BQ9ULE4 1060 aa14.81□□□□□ -0.04
CLK3-215ENST00000564353 A0A1W2PRG0 241 aa14.8□□□□□ -0.04
CLK3-215ENST00000564353 CLRN2A0PK11 232 aa14.8□□□□□ -0.04
CLK3-215ENST00000564353 TARSL2A2RTX5 802 aaKnown RBP14.8□□□□□ -0.04
CLK3-215ENST00000564353 DDX39AO00148 427 aaKnown RBP14.8□□□□□ -0.04
CLK3-215ENST00000564353 KCNK3O14649 394 aa14.8□□□□□ -0.04
CLK3-215ENST00000564353 HEXIM1O94992 359 aaKnown RBP14.8□□□□□ -0.04
CLK3-215ENST00000564353 IQCEQ6IPM2 695 aa14.8□□□□□ -0.04
CLK3-215ENST00000564353 ZNF662Q6ZS27 426 aa14.8□□□□□ -0.04
CLK3-215ENST00000564353 CENPHQ9H3R5 247 aa14.8□□□□□ -0.04
CLK3-215ENST00000564353 STIM2Q9P246 746 aa14.8□□□□□ -0.04
CLK3-215ENST00000564353 DNM3Q9UQ16 869 aa14.8□□□□□ -0.04
CLK3-215ENST00000564353 MYO1CO00159 1063 aa14.8□□□□□ -0.04
CLK3-215ENST00000564353 MSH4O15457 936 aa14.8□□□□□ -0.04
CLK3-215ENST00000564353 TCP1P17987 556 aaKnown RBP14.8□□□□□ -0.04
CLK3-215ENST00000564353 ADRA2BP18089 450 aa14.8□□□□□ -0.04
CLK3-215ENST00000564353 ADAT2Q7Z6V5 191 aaKnown RBP14.8□□□□□ -0.04
CLK3-215ENST00000564353 DDX42Q86XP3 938 aaKnown RBP eCLIP14.8□□□□□ -0.04
CLK3-215ENST00000564353 RBM46Q8TBY0 533 aaKnown RBP14.8□□□□□ -0.04
CLK3-215ENST00000564353 LRRC27Q9C0I9 530 aa14.8□□□□□ -0.04
CLK3-215ENST00000564353 RRP15Q9Y3B9 282 aaKnown RBP14.8□□□□□ -0.04
CLK3-215ENST00000564353 TCP10L2B9ZVM9 353 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 CHRNA5P30532 468 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 SPIRE1Q08AE8 756 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms