RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 CDCP2Q5VXM1 449 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 RNF111Q6ZNA4 994 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 SYTL5Q8TDW5 730 aaPredicted RBP6.84□□□□□ -1.31
VPS35-204ENST00000563884 LINC01599Q8WXQ3 324 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 ZNF333Q96JL9 665 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 SGPP1Q9BX95 441 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 ZNF652Q9Y2D9 606 aa6.84□□□□□ -1.31
VPS35-204ENST00000563884 PSME4Q14997 1843 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 NCANO14594 1321 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 VCANP13611 3396 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 KLRG2A4D1S0 409 aaPredicted RBP6.83□□□□□ -1.32
VPS35-204ENST00000563884 OR14I1A6ND48 311 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 PRRG2O14669 202 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 USP2O75604 605 aaPredicted RBP6.83□□□□□ -1.32
VPS35-204ENST00000563884 CTSWP56202 376 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 CLCQ05315 142 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 APOBRQ0VD83 1088 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 SEZ6Q53EL9 994 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 ADGRF1Q5T601 910 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 METTL16Q86W50 562 aaKnown RBP6.83□□□□□ -1.32
VPS35-204ENST00000563884 KIAA0825Q8IV33 1275 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 RNF34Q969K3 372 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 SPON2Q9BUD6 331 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 G6PC3Q9BUM1 346 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 HDAC8Q9BY41 377 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 FOXP3Q9BZS1 431 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 MTMR10Q9NXD2 777 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 GMIPQ9P107 970 aa6.83□□□□□ -1.32
VPS35-204ENST00000563884 KIAA1522Q9P206 1035 aaPredicted RBP6.83□□□□□ -1.32
VPS35-204ENST00000563884 CNOT7Q9UIV1 285 aaKnown RBP6.83□□□□□ -1.32
VPS35-204ENST00000563884 DDX41Q9UJV9 622 aaKnown RBP6.83□□□□□ -1.32
VPS35-204ENST00000563884 SPTBN5Q9NRC6 3674 aaKnown RBP6.82□□□□□ -1.32
VPS35-204ENST00000563884 ALPK3Q96L96 1907 aa6.82□□□□□ -1.32
VPS35-204ENST00000563884 PCBP3P57721 371 aaKnown RBP6.82□□□□□ -1.32
VPS35-204ENST00000563884 RACK1P63244 317 aaKnown RBP6.82□□□□□ -1.32
VPS35-204ENST00000563884 CXCL9Q07325 125 aa6.82□□□□□ -1.32
VPS35-204ENST00000563884 TCIRG1Q13488 830 aa6.82□□□□□ -1.32
VPS35-204ENST00000563884 ZNF385BQ569K4 471 aa6.82□□□□□ -1.32
VPS35-204ENST00000563884 OLFM4Q6UX06 510 aa6.82□□□□□ -1.32
VPS35-204ENST00000563884 DAGLBQ8NCG7 672 aa6.82□□□□□ -1.32
VPS35-204ENST00000563884 SHISA4Q96DD7 197 aa6.82□□□□□ -1.32
VPS35-204ENST00000563884 CNNM2Q9H8M5 875 aa6.82□□□□□ -1.32
VPS35-204ENST00000563884 NUP98P52948 1817 aa6.82□□□□□ -1.32
VPS35-204ENST00000563884 RIC1Q4ADV7 1423 aa6.82□□□□□ -1.32
VPS35-204ENST00000563884 UNCXA6NJT0 531 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 MEIS3P2A8K0S8 358 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 ADM5C9JUS6 153 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 RFXAPO00287 272 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 PPM1GO15355 546 aaPredicted RBP6.81□□□□□ -1.32
VPS35-204ENST00000563884 UBOX5O94941 541 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 BMP7P18075 431 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 HOXA5P20719 270 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 IL6STP40189 918 aaPredicted RBP6.81□□□□□ -1.32
VPS35-204ENST00000563884 ZNF165P49910 485 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 INHBEP58166 350 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 ZNF394Q53GI3 561 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 OTUD7BQ6GQQ9 843 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 CEP128Q6ZU80 1094 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 TMC3Q7Z5M5 1100 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 NLRX1Q86UT6 975 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 DPF2Q92785 391 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 RPGRQ92834 1020 aaKnown RBP6.81□□□□□ -1.32
VPS35-204ENST00000563884 NKD1Q969G9 470 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 CDCA5Q96FF9 252 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 TCTN2Q96GX1 697 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 MAP6Q96JE9 813 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 TEX13AQ9BXU3 409 aaPredicted RBP6.81□□□□□ -1.32
VPS35-204ENST00000563884 KRTAP4-2Q9BYR5 136 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS35-204ENST00000563884 ZCCHC4Q9H5U6 513 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 GCM1Q9NP62 436 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 TCFL5Q9UL49 500 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 ZNF281Q9Y2X9 895 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 KCTD3Q9Y597 815 aa6.81□□□□□ -1.32
VPS35-204ENST00000563884 KIF7Q2M1P5 1343 aa6.8□□□□□ -1.32
VPS35-204ENST00000563884 ANKRD36CQ5JPF3 1778 aa6.8□□□□□ -1.32
VPS35-204ENST00000563884 NOTOA8MTQ0 251 aa6.8□□□□□ -1.32
VPS35-204ENST00000563884 CAPN2P17655 700 aa6.8□□□□□ -1.32
VPS35-204ENST00000563884 RPS12P25398 132 aaKnown RBP6.8□□□□□ -1.32
VPS35-204ENST00000563884 BMP8BP34820 402 aa6.8□□□□□ -1.32
VPS35-204ENST00000563884 NF2P35240 595 aa6.8□□□□□ -1.32
VPS35-204ENST00000563884 SRSF3P84103 164 aaKnown RBP6.8□□□□□ -1.32
VPS35-204ENST00000563884 LRRFIP1Q32MZ4 808 aaKnown RBP6.8□□□□□ -1.32
VPS35-204ENST00000563884 LRIT3Q3SXY7 679 aa6.8□□□□□ -1.32
VPS35-204ENST00000563884 TCERG1LQ5VWI1 586 aa6.8□□□□□ -1.32
VPS35-204ENST00000563884 CLEC4GQ6UXB4 293 aa6.8□□□□□ -1.32
VPS35-204ENST00000563884 ZNF655Q8N720 491 aaPredicted RBP6.8□□□□□ -1.32
VPS35-204ENST00000563884 ATG4CQ96DT6 458 aa6.8□□□□□ -1.32
VPS35-204ENST00000563884 MRRFQ96E11 262 aaKnown RBP6.8□□□□□ -1.32
VPS35-204ENST00000563884 SIPA1L3O60292 1781 aaPredicted RBP6.8□□□□□ -1.32
VPS35-204ENST00000563884 LAMA2P24043 3122 aaKnown RBP6.79□□□□□ -1.32
VPS35-204ENST00000563884 BDP1A6H8Y1 2624 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 MANSC4A6NHS7 340 aaPredicted RBP6.79□□□□□ -1.32
VPS35-204ENST00000563884 FYB1O15117 783 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 NRDCO43847 1150 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 SYPP08247 313 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 CCNFP41002 786 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 KIR2DL1P43626 348 aaPredicted RBP6.79□□□□□ -1.32
VPS35-204ENST00000563884 KIR2DL2P43627 348 aaPredicted RBP6.79□□□□□ -1.32
VPS35-204ENST00000563884 MAP3K12Q12852 859 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms