RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 CDH22Q9UJ99 828 aa12.05□□□□□ -0.48
SF3B3-204ENST00000563739 PTPRZ1P23471 2315 aaPredicted RBP12.05□□□□□ -0.48
SF3B3-204ENST00000563739 ZBTB5O15062 677 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 PARP1P09874 1014 aaKnown RBP12.04□□□□□ -0.48
SF3B3-204ENST00000563739 CCND2P30279 289 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 NRIP1P48552 1158 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 NDUFV1P49821 464 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 ARHGAP4P98171 946 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 SIGLEC14Q08ET2 396 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 KCNV1Q6PIU1 500 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 CYB5R4Q7L1T6 521 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 KLHL23Q8NBE8 558 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 PLVAPQ9BX97 442 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 TMX1Q9H3N1 280 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 KAT14Q9H8E8 782 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 PCDHA1Q9Y5I3 950 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 MYO10Q9HD67 2058 aa12.04□□□□□ -0.48
SF3B3-204ENST00000563739 CHD8Q9HCK8 2581 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 GSTTP1A0A1W2PQM5 241 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 PROB1E7EW31 1015 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 AVPR2P30518 371 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 CD52P31358 61 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 FOXK2Q01167 660 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 BTG3Q14201 252 aaPredicted RBP12.03□□□□□ -0.48
SF3B3-204ENST00000563739 CMTR2Q8IYT2 770 aaKnown RBP12.03□□□□□ -0.48
SF3B3-204ENST00000563739 FEZF2Q8TBJ5 459 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 POF1BQ8WVV4 589 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 PIGSQ96S52 555 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 PCYT2Q99447 389 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 RNF41Q9H4P4 317 aaPredicted RBP12.03□□□□□ -0.48
SF3B3-204ENST00000563739 RIOX1Q9H6W3 641 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 MLXIPQ9HAP2 919 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 MAP3K20Q9NYL2 800 aaKnown RBP12.03□□□□□ -0.48
SF3B3-204ENST00000563739 RWDD3Q9Y3V2 267 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 CDY2AQ9Y6F7 541 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 TAF6LQ9Y6J9 622 aa12.03□□□□□ -0.48
SF3B3-204ENST00000563739 FRYLO94915 3013 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 KLRF2D3W0D1 207 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 FSCN2O14926 492 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 MGEA5O60502 916 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 ATP9AO75110 1047 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 KRT37O76014 449 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 KCNA2P16389 499 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 PTPN21Q16825 1174 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 UTP14CQ5TAP6 766 aaKnown RBP12.02□□□□□ -0.49
SF3B3-204ENST00000563739 TSHZ1Q6ZSZ6 1077 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 FCHSD1Q86WN1 690 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 PHF7Q9BWX1 381 aaPredicted RBP12.02□□□□□ -0.49
SF3B3-204ENST00000563739 USP26Q9BXU7 913 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 S1PR5Q9H228 398 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 SMOC2Q9H3U7 446 aa12.02□□□□□ -0.49
SF3B3-204ENST00000563739 PRR23AA6NEV1 266 aa12.01□□□□□ -0.49
SF3B3-204ENST00000563739 DHX16O60231 1041 aaKnown RBP12.01□□□□□ -0.49
SF3B3-204ENST00000563739 SDSP20132 328 aa12.01□□□□□ -0.49
SF3B3-204ENST00000563739 GRM4Q14833 912 aa12.01□□□□□ -0.49
SF3B3-204ENST00000563739 PAN2Q504Q3 1202 aaKnown RBP12.01□□□□□ -0.49
SF3B3-204ENST00000563739 SYCE2Q6PIF2 218 aa12.01□□□□□ -0.49
SF3B3-204ENST00000563739 RBM23Q86U06 439 aaKnown RBP12.01□□□□□ -0.49
SF3B3-204ENST00000563739 TICAM2Q86XR7 235 aa12.01□□□□□ -0.49
SF3B3-204ENST00000563739 HOMER1Q86YM7 354 aa12.01□□□□□ -0.49
SF3B3-204ENST00000563739 SAMD3Q8N6K7 520 aa12.01□□□□□ -0.49
SF3B3-204ENST00000563739 TMEM105Q8N8V8 129 aa12.01□□□□□ -0.49
SF3B3-204ENST00000563739 DNAJB3Q8WWF6 145 aa12.01□□□□□ -0.49
SF3B3-204ENST00000563739 RTEL1Q9NZ71 1219 aa12.01□□□□□ -0.49
SF3B3-204ENST00000563739 NRCAMQ92823 1304 aa12.01□□□□□ -0.49
SF3B3-204ENST00000563739 TRIM6-TRIM34B2RNG4 842 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 H0Y858 1186 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 GCOM1H8Y6P7 765 aaPredicted RBP12□□□□□ -0.49
SF3B3-204ENST00000563739 MEIS2O14770 477 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 ZNF213O14771 459 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 PER2O15055 1255 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 FIBPO43427 364 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 POLR2MP0CAP2 368 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 ATF7P17544 494 aaPredicted RBP12□□□□□ -0.49
SF3B3-204ENST00000563739 TCF7P36402 384 aaPredicted RBP12□□□□□ -0.49
SF3B3-204ENST00000563739 ERVFC1P60507 584 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 MRPS6P82932 125 aaKnown RBP12□□□□□ -0.49
SF3B3-204ENST00000563739 SP4Q02446 784 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 COL9A3Q14050 684 aaPredicted RBP12□□□□□ -0.49
SF3B3-204ENST00000563739 GRIK4Q16099 956 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 DUSP6Q16828 381 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 NAALADL2Q58DX5 795 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 ANKRD45Q5TZF3 282 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 IQCA1Q86XH1 822 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 NPAS4Q8IUM7 802 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 SUGP1Q8IWZ8 645 aaKnown RBP12□□□□□ -0.49
SF3B3-204ENST00000563739 RPGRIP1Q96KN7 1286 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 PRRX2Q99811 253 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 TLR9Q9NR96 1032 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 TUBE1Q9UJT0 475 aa12□□□□□ -0.49
SF3B3-204ENST00000563739 WDR81Q562E7 1941 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 EVPLQ92817 2033 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 NOP56O00567 594 aaKnown RBP11.99□□□□□ -0.49
SF3B3-204ENST00000563739 ITGB5P18084 799 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 MARK3P27448 753 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 NBL1P41271 181 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 NT5C2P49902 561 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 TROAPQ12815 778 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 PPFIA1Q13136 1202 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 NEDD9Q14511 834 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms