RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 PSAPP07602 524 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 LIG1P18858 919 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 RPA1P27694 616 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 NDUFA8P51970 172 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 NKX3-2P78367 333 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 CTTNQ14247 550 aaKnown RBP18.61■□□□□ 0.57
VPS4A-202ENST00000562754 TMEM119Q4V9L6 283 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 HYIQ5T013 277 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 POTEGQ6S5H5 508 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 CATSPER3Q86XQ3 398 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 TRIM50Q86XT4 487 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 NEK9Q8TD19 979 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 ARMC5Q96C12 935 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 LXNQ9BS40 222 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 TUFT1Q9NNX1 390 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 FAM13BQ9NYF5 915 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 EMSYQ7Z589 1322 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 KDM3AQ9Y4C1 1321 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 SLITRK3O94933 977 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 PGK1P00558 417 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 MYCP01106 439 aaPredicted RBP18.6■□□□□ 0.57
VPS4A-202ENST00000562754 CCL5P13501 91 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 PLCG1P19174 1290 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 TXLNAP40222 546 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 BEX3Q00994 111 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 NFKBIBQ15653 356 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 ZRSR1Q15695 479 aaKnown RBP18.6■□□□□ 0.57
VPS4A-202ENST00000562754 LHX8Q68G74 356 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 SWSAP1Q6NVH7 229 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 ZNF333Q96JL9 665 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 PLIN2Q99541 437 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 XPNPEP3Q9NQH7 507 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 PAK6Q9NQU5 681 aaPredicted RBP18.6■□□□□ 0.57
VPS4A-202ENST00000562754 GABBR1Q9UBS5 961 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 KCNH3Q9ULD8 1083 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 STK24Q9Y6E0 443 aa18.6■□□□□ 0.57
VPS4A-202ENST00000562754 ARID2Q68CP9 1835 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 BACH1O14867 736 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 SLC26A4O43511 780 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 ZNF862O60290 1169 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 MSCO60682 206 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 LGALS2P05162 132 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 P4HBP07237 508 aaKnown RBP18.59■□□□□ 0.57
VPS4A-202ENST00000562754 ZNF286BP0CG31 522 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 E2F4Q16254 413 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 FSCN1Q16658 493 aaKnown RBP18.59■□□□□ 0.57
VPS4A-202ENST00000562754 UTP14CQ5TAP6 766 aaKnown RBP18.59■□□□□ 0.57
VPS4A-202ENST00000562754 KCNK18Q7Z418 384 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 TPH2Q8IWU9 490 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 PDILTQ8N807 584 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 ENGASEQ8NFI3 743 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 GPT2Q8TD30 523 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 PANK2Q9BZ23 570 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 ZNF302Q9NR11 478 aa18.59■□□□□ 0.57
VPS4A-202ENST00000562754 C6orf222P0C671 652 aaPredicted RBP18.58■□□□□ 0.56
VPS4A-202ENST00000562754 ATP4AP20648 1035 aa18.58■□□□□ 0.56
VPS4A-202ENST00000562754 QARSP47897 775 aaKnown RBP18.58■□□□□ 0.56
VPS4A-202ENST00000562754 CPT1AP50416 773 aa18.58■□□□□ 0.56
VPS4A-202ENST00000562754 PSMC5P62195 406 aa18.58■□□□□ 0.56
VPS4A-202ENST00000562754 FAM160A1Q05DH4 1040 aa18.58■□□□□ 0.56
VPS4A-202ENST00000562754 NAALADL2Q58DX5 795 aa18.58■□□□□ 0.56
VPS4A-202ENST00000562754 CCDC73Q6ZRK6 1079 aa18.58■□□□□ 0.56
VPS4A-202ENST00000562754 FMR1NBQ8N0W7 255 aaPredicted RBP18.58■□□□□ 0.56
VPS4A-202ENST00000562754 KLHDC9Q8NEP7 349 aa18.58■□□□□ 0.56
VPS4A-202ENST00000562754 RASSF8Q8NHQ8 419 aa18.58■□□□□ 0.56
VPS4A-202ENST00000562754 AFAP1L1Q8TED9 768 aa18.58■□□□□ 0.56
VPS4A-202ENST00000562754 CALML4Q96GE6 196 aa18.58■□□□□ 0.56
VPS4A-202ENST00000562754 MCOLN1Q9GZU1 580 aa18.58■□□□□ 0.56
VPS4A-202ENST00000562754 DDX19AQ9NUU7 478 aaKnown RBP18.58■□□□□ 0.56
VPS4A-202ENST00000562754 KIAA1024Q9UPX6 916 aa18.58■□□□□ 0.56
VPS4A-202ENST00000562754 MAFBQ9Y5Q3 323 aaPredicted RBP18.58■□□□□ 0.56
VPS4A-202ENST00000562754 LOXHD1Q8IVV2 1947 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 A0A087WWV3 80 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 POLR2DO15514 142 aaKnown RBP18.57■□□□□ 0.56
VPS4A-202ENST00000562754 PPFIA4O75335 1185 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 NR1I2O75469 434 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 STBD1O95210 358 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 LYPLA2O95372 231 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 CST5P28325 142 aaPredicted RBP18.57■□□□□ 0.56
VPS4A-202ENST00000562754 SYKP43405 635 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 PSMC6P62333 389 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 PRKCEQ02156 737 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 SNW1Q13573 536 aaKnown RBP18.57■□□□□ 0.56
VPS4A-202ENST00000562754 DGKDQ16760 1214 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 FAM160B1Q5W0V3 765 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 ATP6V0A1Q93050 837 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 DHX58Q96C10 678 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 CDK5RAP3Q96JB5 506 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 C16orf70Q9BSU1 422 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 ZSWIM4Q9H7M6 989 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 BLOC1S4Q9NUP1 217 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 CCDC39Q9UFE4 941 aa18.57■□□□□ 0.56
VPS4A-202ENST00000562754 SCN10AQ9Y5Y9 1956 aa18.56■□□□□ 0.56
VPS4A-202ENST00000562754 ZBTB39O15060 712 aa18.56■□□□□ 0.56
VPS4A-202ENST00000562754 MUTP22033 750 aa18.56■□□□□ 0.56
VPS4A-202ENST00000562754 STAT5BP51692 787 aa18.56■□□□□ 0.56
VPS4A-202ENST00000562754 RRAGBQ5VZM2 374 aa18.56■□□□□ 0.56
VPS4A-202ENST00000562754 CCSAPQ6IQ19 270 aaPredicted RBP18.56■□□□□ 0.56
VPS4A-202ENST00000562754 PDXDC2PQ6P474 469 aa18.56■□□□□ 0.56
VPS4A-202ENST00000562754 C4orf19Q8IY42 314 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms