RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SPATA20Q8TB22 786 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 MXD3Q9BW11 206 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 TSGA10Q9BZW7 698 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 CSRNP2Q9H175 543 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 SRPRBQ9Y5M8 271 aaKnown RBP14.57□□□□□ -0.08
CLK3-206ENST00000562078 GAKO14976 1311 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 NLRP5P59047 1200 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 C1QTNF12Q5T7M4 302 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 C8orf74Q6P047 294 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 NFRKBQ6P4R8 1299 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 CD302Q8IX05 232 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 NDST4Q9H3R1 872 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 ZFATQ9P243 1243 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 SLC12A6Q9UHW9 1150 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 CTNND2Q9UQB3 1225 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 MYH4Q9Y623 1939 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 SMIM24O75264 130 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 COPB1P53618 953 aaKnown RBP14.56□□□□□ -0.08
CLK3-206ENST00000562078 ROR2Q01974 943 aaKnown RBP14.56□□□□□ -0.08
CLK3-206ENST00000562078 CYP27A1Q02318 531 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 GRM4Q14833 912 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 GKAP1Q5VSY0 366 aaPredicted RBP14.56□□□□□ -0.08
CLK3-206ENST00000562078 MAEAQ7L5Y9 396 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 TAX1BP1Q86VP1 789 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 CERS5Q8N5B7 392 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 GPKOWQ92917 476 aaPredicted RBP eCLIP14.56□□□□□ -0.08
CLK3-206ENST00000562078 PIDD1Q9HB75 910 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 KCNQ5Q9NR82 932 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 RBM12Q9NTZ6 932 aaKnown RBP14.56□□□□□ -0.08
CLK3-206ENST00000562078 CHCHD3Q9NX63 227 aaKnown RBP14.56□□□□□ -0.08
CLK3-206ENST00000562078 PLAAQ9Y263 795 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 DAGLAQ9Y4D2 1042 aa14.56□□□□□ -0.08
CLK3-206ENST00000562078 C5orf60A6NFR6 353 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 B4DLN1 442 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 PPP1R3GB7ZBB8 358 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 ADAMTS3O15072 1205 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 GHRP10912 638 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 FERP16591 822 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 TNFRSF8P28908 595 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 CDK8P49336 464 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 TRADDQ15628 312 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 DALRD3Q5D0E6 543 aaKnown RBP14.55□□□□□ -0.08
CLK3-206ENST00000562078 C16orf86Q6ZW13 317 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 SPATA21Q7Z572 469 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 SPICE1Q8N0Z3 855 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 ZNF579Q8NAF0 562 aaKnown RBP14.55□□□□□ -0.08
CLK3-206ENST00000562078 NOC3LQ8WTT2 800 aaKnown RBP14.55□□□□□ -0.08
CLK3-206ENST00000562078 RAPGEF5Q92565 580 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 ANKS1AQ92625 1134 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 ALS2CR12Q96Q35 445 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 OSBPL1AQ9BXW6 950 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 RGL1Q9NZL6 768 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 LIN7AO14910 233 aaPredicted RBP14.55□□□□□ -0.08
CLK3-206ENST00000562078 NT5C2P49902 561 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 KRT83P78385 493 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 UBXN1Q04323 297 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 RIPK1Q13546 671 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 TRIM14Q14142 442 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 SLMAPQ14BN4 828 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 ZNF174Q15697 407 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 TTC38Q5R3I4 469 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 SOGA3Q5TF21 947 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 CHADLQ6NUI6 762 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 PIK3AP1Q6ZUJ8 805 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 OR2W6PQ8NHA6 318 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 PRCCQ92733 491 aaPredicted RBP14.55□□□□□ -0.08
CLK3-206ENST00000562078 FAM163AQ96GL9 167 aaPredicted RBP14.55□□□□□ -0.08
CLK3-206ENST00000562078 SGIP1Q9BQI5 828 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 TMEM47Q9BQJ4 181 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 TMBIM4Q9HC24 238 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 EPB41L5Q9HCM4 733 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 MAD2L2Q9UI95 211 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 SUGT1Q9Y2Z0 365 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 CAPN6Q9Y6Q1 641 aa14.55□□□□□ -0.08
CLK3-206ENST00000562078 ZNF646O15015 1829 aaPredicted RBP14.54□□□□□ -0.08
CLK3-206ENST00000562078 DPPA5A6NC42 116 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 GUCY2DQ02846 1103 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 PAK2Q13177 524 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 CCDC178Q5BJE1 867 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 ZNF572Q7Z3I7 529 aaPredicted RBP14.54□□□□□ -0.08
CLK3-206ENST00000562078 CPLX4Q7Z7G2 160 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 CCHCR1Q8TD31 782 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 ZNF287Q9HBT7 754 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 TCP11L1Q9NUJ3 509 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 CNOT8Q9UFF9 292 aaKnown RBP14.54□□□□□ -0.08
CLK3-206ENST00000562078 LIMA1Q9UHB6 759 aaKnown RBP14.54□□□□□ -0.08
CLK3-206ENST00000562078 RNF8O76064 485 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 ITIH3Q06033 890 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 PICALMQ13492 652 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 CDC37Q16543 378 aaPredicted RBP14.54□□□□□ -0.08
CLK3-206ENST00000562078 ARFGAP2Q8N6H7 521 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 ZNF277Q9NRM2 450 aaPredicted RBP14.54□□□□□ -0.08
CLK3-206ENST00000562078 CD2APQ9Y5K6 639 aa14.54□□□□□ -0.08
CLK3-206ENST00000562078 CCT8L1PA6NM43 557 aa14.53□□□□□ -0.08
CLK3-206ENST00000562078 PPFIA2O75334 1257 aa14.53□□□□□ -0.08
CLK3-206ENST00000562078 PTGER2P43116 358 aa14.53□□□□□ -0.08
CLK3-206ENST00000562078 GCLCP48506 637 aaPredicted RBP14.53□□□□□ -0.08
CLK3-206ENST00000562078 SCNN1DP51172 638 aa14.53□□□□□ -0.08
CLK3-206ENST00000562078 SLC35G1Q2M3R5 365 aa14.53□□□□□ -0.08
CLK3-206ENST00000562078 PPP1R15BQ5SWA1 713 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms