RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 FAM86C2PA6NEL3 165 aa18.87■□□□□ 0.61
CLN3-208ENST00000561505 RRN3P2A6NIE6 340 aa18.87■□□□□ 0.61
CLN3-208ENST00000561505 PRC1O43663 620 aa18.87■□□□□ 0.61
CLN3-208ENST00000561505 MYO7AQ13402 2215 aa18.87■□□□□ 0.61
CLN3-208ENST00000561505 CAMK1Q14012 370 aa18.87■□□□□ 0.61
CLN3-208ENST00000561505 ATG2AQ2TAZ0 1938 aa18.87■□□□□ 0.61
CLN3-208ENST00000561505 TSHZ1Q6ZSZ6 1077 aa18.87■□□□□ 0.61
CLN3-208ENST00000561505 RSPH3Q86UC2 560 aa18.87■□□□□ 0.61
CLN3-208ENST00000561505 RTN4RL1Q86UN2 441 aaPredicted RBP18.87■□□□□ 0.61
CLN3-208ENST00000561505 LINC01599Q8WXQ3 324 aa18.87■□□□□ 0.61
CLN3-208ENST00000561505 PIBF1Q8WXW3 757 aa18.87■□□□□ 0.61
CLN3-208ENST00000561505 P2RX5Q93086 422 aa18.87■□□□□ 0.61
CLN3-208ENST00000561505 AGO3Q9H9G7 860 aaKnown RBP18.87■□□□□ 0.61
CLN3-208ENST00000561505 SEC63Q9UGP8 760 aaKnown RBP18.87■□□□□ 0.61
CLN3-208ENST00000561505 FAM50BQ9Y247 325 aa18.87■□□□□ 0.61
CLN3-208ENST00000561505 KAT6AQ92794 2004 aa18.86■□□□□ 0.61
CLN3-208ENST00000561505 GRM6O15303 877 aa18.86■□□□□ 0.61
CLN3-208ENST00000561505 CALM1P0DP23 149 aa18.86■□□□□ 0.61
CLN3-208ENST00000561505 CALM2P0DP24 149 aa18.86■□□□□ 0.61
CLN3-208ENST00000561505 CALM3P0DP25 149 aa18.86■□□□□ 0.61
CLN3-208ENST00000561505 MCM5P33992 734 aa18.86■□□□□ 0.61
CLN3-208ENST00000561505 HYAL1Q12794 435 aa18.86■□□□□ 0.61
CLN3-208ENST00000561505 MTMR1Q13613 665 aa18.86■□□□□ 0.61
CLN3-208ENST00000561505 SMAD2Q15796 467 aaKnown RBP18.86■□□□□ 0.61
CLN3-208ENST00000561505 NAALADL2Q58DX5 795 aa18.86■□□□□ 0.61
CLN3-208ENST00000561505 SGMS1Q86VZ5 419 aa18.86■□□□□ 0.61
CLN3-208ENST00000561505 ADHFE1Q8IWW8 467 aa18.86■□□□□ 0.61
CLN3-208ENST00000561505 LSG1Q9H089 658 aaKnown RBP18.86■□□□□ 0.61
CLN3-208ENST00000561505 MUC6Q6W4X9 2439 aa18.86■□□□□ 0.61
CLN3-208ENST00000561505 KDM3AQ9Y4C1 1321 aa18.85■□□□□ 0.61
CLN3-208ENST00000561505 ATG7O95352 703 aa18.85■□□□□ 0.61
CLN3-208ENST00000561505 MMP1P03956 469 aa18.85■□□□□ 0.61
CLN3-208ENST00000561505 INSRRP14616 1297 aa18.85■□□□□ 0.61
CLN3-208ENST00000561505 CTNNB1P35222 781 aa18.85■□□□□ 0.61
CLN3-208ENST00000561505 MRPS6P82932 125 aaKnown RBP18.85■□□□□ 0.61
CLN3-208ENST00000561505 SP4Q02446 784 aa18.85■□□□□ 0.61
CLN3-208ENST00000561505 NECTIN1Q15223 517 aa18.85■□□□□ 0.61
CLN3-208ENST00000561505 DNAJB3Q8WWF6 145 aa18.85■□□□□ 0.61
CLN3-208ENST00000561505 PCDHA6Q9UN73 950 aa18.85■□□□□ 0.61
CLN3-208ENST00000561505 PCDHA8Q9Y5H6 950 aa18.85■□□□□ 0.61
CLN3-208ENST00000561505 CDY2AQ9Y6F7 541 aa18.85■□□□□ 0.61
CLN3-208ENST00000561505 NFASCO94856 1347 aa18.84■□□□□ 0.61
CLN3-208ENST00000561505 DCXO43602 365 aa18.84■□□□□ 0.61
CLN3-208ENST00000561505 ADAM15Q13444 863 aa18.84■□□□□ 0.61
CLN3-208ENST00000561505 CASC1Q6TDU7 716 aa18.84■□□□□ 0.61
CLN3-208ENST00000561505 TMTC3Q6ZXV5 915 aa18.84■□□□□ 0.61
CLN3-208ENST00000561505 PLPPR4Q7Z2D5 763 aa18.84■□□□□ 0.61
CLN3-208ENST00000561505 FANCBQ8NB91 859 aa18.84■□□□□ 0.61
CLN3-208ENST00000561505 FTHL17Q9BXU8 183 aa18.84■□□□□ 0.61
CLN3-208ENST00000561505 KCNH6Q9H252 994 aa18.84■□□□□ 0.61
CLN3-208ENST00000561505 CLDND1Q9NY35 253 aa18.84■□□□□ 0.61
CLN3-208ENST00000561505 PLAGL2Q9UPG8 496 aa18.84■□□□□ 0.61
CLN3-208ENST00000561505 PCDHA2Q9Y5H9 948 aa18.84■□□□□ 0.61
CLN3-208ENST00000561505 IGSF9BQ9UPX0 1349 aa18.83■□□□□ 0.61
CLN3-208ENST00000561505 IGKV6D-21A0A0A0MT36 114 aa18.83■□□□□ 0.6
CLN3-208ENST00000561505 SSTR3P32745 418 aaPredicted RBP18.83■□□□□ 0.6
CLN3-208ENST00000561505 DLX2Q07687 328 aaPredicted RBP18.83■□□□□ 0.6
CLN3-208ENST00000561505 FUT2Q10981 343 aa18.83■□□□□ 0.6
CLN3-208ENST00000561505 IER5Q5VY09 327 aa18.83■□□□□ 0.6
CLN3-208ENST00000561505 CMTR2Q8IYT2 770 aaKnown RBP18.83■□□□□ 0.6
CLN3-208ENST00000561505 CMTR1Q8N1G2 835 aaKnown RBP18.83■□□□□ 0.6
CLN3-208ENST00000561505 GLG1Q92896 1179 aa18.83■□□□□ 0.6
CLN3-208ENST00000561505 MSLNLQ96KJ4 702 aa18.83■□□□□ 0.6
CLN3-208ENST00000561505 MXRA8Q9BRK3 442 aa18.83■□□□□ 0.6
CLN3-208ENST00000561505 KCNH7Q9NS40 1196 aa18.83■□□□□ 0.6
CLN3-208ENST00000561505 SMIM35A0A1B0GVV1 85 aa18.82■□□□□ 0.6
CLN3-208ENST00000561505 CCDC69A6NI79 296 aa18.82■□□□□ 0.6
CLN3-208ENST00000561505 SLC27A2O14975 620 aa18.82■□□□□ 0.6
CLN3-208ENST00000561505 MBTPS2O43462 519 aa18.82■□□□□ 0.6
CLN3-208ENST00000561505 CD52P31358 61 aa18.82■□□□□ 0.6
CLN3-208ENST00000561505 IRS1P35568 1242 aa18.82■□□□□ 0.6
CLN3-208ENST00000561505 BTG3Q14201 252 aaPredicted RBP18.82■□□□□ 0.6
CLN3-208ENST00000561505 UBE2SQ16763 222 aa18.82■□□□□ 0.6
CLN3-208ENST00000561505 NPAS4Q8IUM7 802 aa18.82■□□□□ 0.6
CLN3-208ENST00000561505 NME8Q8N427 588 aa18.82■□□□□ 0.6
CLN3-208ENST00000561505 SPPL3Q8TCT6 385 aa18.82■□□□□ 0.6
CLN3-208ENST00000561505 TNPO1Q92973 898 aaKnown RBP18.82■□□□□ 0.6
CLN3-208ENST00000561505 JPH1Q9HDC5 661 aaPredicted RBP18.82■□□□□ 0.6
CLN3-208ENST00000561505 SLC9A2Q9UBY0 812 aa18.82■□□□□ 0.6
CLN3-208ENST00000561505 SPDYE3A6NKU9 549 aa18.81■□□□□ 0.6
CLN3-208ENST00000561505 MEIS1O00470 390 aa18.81■□□□□ 0.6
CLN3-208ENST00000561505 EYA4O95677 639 aa18.81■□□□□ 0.6
CLN3-208ENST00000561505 MARK3P27448 753 aa18.81■□□□□ 0.6
CLN3-208ENST00000561505 PLCB4Q15147 1175 aa18.81■□□□□ 0.6
CLN3-208ENST00000561505 HERC4Q5GLZ8 1057 aaPredicted RBP18.81■□□□□ 0.6
CLN3-208ENST00000561505 UPF3BQ9BZI7 483 aaKnown RBP18.81■□□□□ 0.6
CLN3-208ENST00000561505 PADI3Q9ULW8 664 aa18.81■□□□□ 0.6
CLN3-208ENST00000561505 TRPV2Q9Y5S1 764 aa18.81■□□□□ 0.6
CLN3-208ENST00000561505 MRPL42Q9Y6G3 142 aaKnown RBP18.81■□□□□ 0.6
CLN3-208ENST00000561505 TBX10O75333 385 aa18.8■□□□□ 0.6
CLN3-208ENST00000561505 FOSP01100 380 aaPredicted RBP18.8■□□□□ 0.6
CLN3-208ENST00000561505 RXRAP19793 462 aa18.8■□□□□ 0.6
CLN3-208ENST00000561505 DNAJB1P25685 340 aa18.8■□□□□ 0.6
CLN3-208ENST00000561505 SLC26A2P50443 739 aa18.8■□□□□ 0.6
CLN3-208ENST00000561505 ACTR2P61160 394 aa18.8■□□□□ 0.6
CLN3-208ENST00000561505 SMAD4Q13485 552 aaKnown RBP18.8■□□□□ 0.6
CLN3-208ENST00000561505 TYW1BQ6NUM6 668 aa18.8■□□□□ 0.6
CLN3-208ENST00000561505 NFXL1Q6ZNB6 911 aa18.8■□□□□ 0.6
CLN3-208ENST00000561505 CYP2W1Q8TAV3 490 aa18.8■□□□□ 0.6
CLN3-208ENST00000561505 ZBTB10Q96DT7 871 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms