RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 ZNF496Q96IT1 587 aaPredicted RBP4.23□□□□□ -1.73
SPG11-225ENST00000561391 SEC16BQ96JE7 1060 aa4.23□□□□□ -1.73
SPG11-225ENST00000561391 UIMC1Q96RL1 719 aa4.23□□□□□ -1.73
SPG11-225ENST00000561391 ANTXR1Q9H6X2 564 aa4.23□□□□□ -1.73
SPG11-225ENST00000561391 THEGQ9P2T0 379 aa4.23□□□□□ -1.73
SPG11-225ENST00000561391 TJP2Q9UDY2 1190 aa4.23□□□□□ -1.73
SPG11-225ENST00000561391 SRRDQ9UH36 339 aa4.23□□□□□ -1.73
SPG11-225ENST00000561391 ZNF652Q9Y2D9 606 aa4.23□□□□□ -1.73
SPG11-225ENST00000561391 U3KQE9 123 aa4.23□□□□□ -1.73
SPG11-225ENST00000561391 NCAPD2Q15021 1401 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 MUC6Q6W4X9 2439 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 CHURC1-FNTBB4DL54 471 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 NPIPB6E9PJ23 425 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 ECE2O60344 883 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 GLI1P08151 1106 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 C1QTNF9P0C862 333 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 ATP2B1P20020 1258 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 HOXD10P28358 340 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 CTGFP29279 349 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 GTF2F1P35269 517 aaKnown RBP eCLIP4.22□□□□□ -1.73
SPG11-225ENST00000561391 SOX9P48436 509 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 OXCT1P55809 520 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 COL9A2Q14055 689 aaPredicted RBP4.22□□□□□ -1.73
SPG11-225ENST00000561391 SHHQ15465 462 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 MCF2L2Q86YR7 1114 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 PHACTR4Q8IZ21 702 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 TTC5Q8N0Z6 440 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 KCT2Q8NC54 265 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 FBXO15Q8NCQ5 510 aaPredicted RBP4.22□□□□□ -1.73
SPG11-225ENST00000561391 ASB11Q8WXH4 323 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 ACSF2Q96CM8 615 aaPredicted RBP4.22□□□□□ -1.73
SPG11-225ENST00000561391 TMEM87BQ96K49 555 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 LBHD1Q9BQE6 289 aaPredicted RBP4.22□□□□□ -1.73
SPG11-225ENST00000561391 SRRTQ9BXP5 876 aaKnown RBP4.22□□□□□ -1.73
SPG11-225ENST00000561391 TEX13AQ9BXU3 409 aaPredicted RBP4.22□□□□□ -1.73
SPG11-225ENST00000561391 EHMT1Q9H9B1 1298 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 MYOZ2Q9NPC6 264 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 TACC3Q9Y6A5 838 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 TAF1P21675 1872 aa4.22□□□□□ -1.73
SPG11-225ENST00000561391 ZSWIM8A7E2V4 1837 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 ALPK3Q96L96 1907 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 SLC22A31A6NKX4 558 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.21□□□□□ -1.74
SPG11-225ENST00000561391 RNMTO43148 476 aaKnown RBP4.21□□□□□ -1.74
SPG11-225ENST00000561391 DNAJA2O60884 412 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 LEFTY1O75610 366 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 BBOX1O75936 387 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 ATE1O95260 518 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 CENPBP07199 599 aaPredicted RBP4.21□□□□□ -1.74
SPG11-225ENST00000561391 VIL1P09327 827 aaKnown RBP4.21□□□□□ -1.74
SPG11-225ENST00000561391 YARSP54577 528 aaKnown RBP4.21□□□□□ -1.74
SPG11-225ENST00000561391 ZNF280AP59817 542 aaPredicted RBP4.21□□□□□ -1.74
SPG11-225ENST00000561391 SLBPQ14493 270 aaKnown RBP eCLIP4.21□□□□□ -1.74
SPG11-225ENST00000561391 PPP2R5EQ16537 467 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 ARSHQ5FYA8 562 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 PRAMEF13Q5VWM6 474 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 RUFY4Q6ZNE9 571 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 ARMCX6Q7L4S7 300 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 MCATQ8IVS2 390 aaKnown RBP4.21□□□□□ -1.74
SPG11-225ENST00000561391 FAM43AQ8N2R8 423 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 TOP6BLQ8N6T0 577 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 BRI3BPQ8WY22 251 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 DHX38Q92620 1227 aaKnown RBP4.21□□□□□ -1.74
SPG11-225ENST00000561391 KIRREL1Q96J84 757 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 DIRC2Q96SL1 478 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 DUSP23Q9BVJ7 150 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 NYXQ9GZU5 481 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 GMIPQ9P107 970 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 ADAM30Q9UKF2 790 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 PLAGL2Q9UPG8 496 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 CTNND2Q9UQB3 1225 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 KIF24Q5T7B8 1368 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 RTL9Q8NET4 1388 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 ABCC12Q96J65 1359 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 ZNF646O15015 1829 aaPredicted RBP4.21□□□□□ -1.74
SPG11-225ENST00000561391 MYPNQ86TC9 1320 aa4.21□□□□□ -1.74
SPG11-225ENST00000561391 CCL15-CCL14A0A0B4J2E2 113 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 TCAF2A6NFQ2 919 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 TLR2O60603 784 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 WDHD1O75717 1129 aaPredicted RBP4.2□□□□□ -1.74
SPG11-225ENST00000561391 TMEM253P0C7T8 217 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 IMPDH2P12268 514 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 RAG1P15918 1043 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 GPTP24298 496 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 ETFBP38117 255 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 CHMP4BP1P59074 171 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 KCTD2Q14681 263 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 SF3A1Q15459 793 aaKnown RBP4.2□□□□□ -1.74
SPG11-225ENST00000561391 CCL15Q16663 113 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 LRRFIP1Q32MZ4 808 aaKnown RBP4.2□□□□□ -1.74
SPG11-225ENST00000561391 TMEM67Q5HYA8 995 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 TMEM201Q5SNT2 666 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 C9orf50Q5SZB4 431 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 FYB2Q5VWT5 728 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 SUSD4Q5VX71 490 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 SLC6A19Q695T7 634 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 OVOS1Q6IE37 1185 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 MRPL41Q8IXM3 137 aaKnown RBP4.2□□□□□ -1.74
SPG11-225ENST00000561391 NGEFQ8N5V2 710 aa4.2□□□□□ -1.74
SPG11-225ENST00000561391 ZBTB38Q8NAP3 1195 aaPredicted RBP4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms