RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 RNPEPQ9H4A4 650 aa12.3□□□□□ -0.44
TPM1-227ENST00000560970 C11orf16Q9NQ32 467 aa12.3□□□□□ -0.44
TPM1-227ENST00000560970 NAP1L2Q9ULW6 460 aaPredicted RBP12.3□□□□□ -0.44
TPM1-227ENST00000560970 ARIH1Q9Y4X5 557 aaPredicted RBP12.3□□□□□ -0.44
TPM1-227ENST00000560970 ADGRA3Q8IWK6 1321 aa12.3□□□□□ -0.44
TPM1-227ENST00000560970 KMT2EQ8IZD2 1858 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 EVPLQ92817 2033 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.29□□□□□ -0.44
TPM1-227ENST00000560970 FAM86C2PA6NEL3 165 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 H3BNC9 293 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 IL9P15248 144 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 SMARCA1P28370 1054 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 METAP2P50579 478 aaKnown RBP eCLIP12.29□□□□□ -0.44
TPM1-227ENST00000560970 RCAN1P53805 252 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 ANAPC15P60006 121 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 ADAM17P78536 824 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 SP4Q02446 784 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 FAM26DQ5JW98 314 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 UTP14CQ5TAP6 766 aaKnown RBP12.29□□□□□ -0.44
TPM1-227ENST00000560970 PTCRAQ6ISU1 281 aaPredicted RBP12.29□□□□□ -0.44
TPM1-227ENST00000560970 TAF2Q6P1X5 1199 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 SYNE3Q6ZMZ3 975 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 NLRX1Q86UT6 975 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 GIMAP8Q8ND71 665 aaPredicted RBP12.29□□□□□ -0.44
TPM1-227ENST00000560970 TOP1MTQ969P6 601 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 SENP7Q9BQF6 1050 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 LZTS2Q9BRK4 669 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 NSUN3Q9H649 340 aaKnown RBP12.29□□□□□ -0.44
TPM1-227ENST00000560970 BCAS3Q9H6U6 928 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 SETD4Q9NVD3 440 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 RBM28Q9NW13 759 aaKnown RBP12.29□□□□□ -0.44
TPM1-227ENST00000560970 CYP46A1Q9Y6A2 500 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 NRCAMQ92823 1304 aa12.29□□□□□ -0.44
TPM1-227ENST00000560970 GPR37L1O60883 481 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 UPP2O95045 317 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 CTNNB1P35222 781 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 ADD1P35611 737 aaKnown RBP12.28□□□□□ -0.44
TPM1-227ENST00000560970 TCF7P36402 384 aaPredicted RBP12.28□□□□□ -0.44
TPM1-227ENST00000560970 EVCP57679 992 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 GPM6BQ13491 265 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 PUS10Q3MIT2 529 aaKnown RBP12.28□□□□□ -0.44
TPM1-227ENST00000560970 FAM178BQ8IXR5 827 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 TMEM192Q8IY95 271 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 BANK1Q8NDB2 785 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.28□□□□□ -0.44
TPM1-227ENST00000560970 NEK9Q8TD19 979 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 GPRASP2Q96D09 838 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 CDHR1Q96JP9 859 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 OSBPL7Q9BZF2 842 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 NCOA5Q9HCD5 579 aaKnown RBP12.28□□□□□ -0.44
TPM1-227ENST00000560970 PDRG1Q9NUG6 133 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 RTEL1Q9NZ71 1219 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 TUBE1Q9UJT0 475 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 RWDD3Q9Y3V2 267 aa12.28□□□□□ -0.44
TPM1-227ENST00000560970 PI4K2BG5E9Z4 385 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 MEIS2O14770 477 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 GHRP10912 638 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 KCNA2P16389 499 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 PDIA3P30101 505 aaKnown RBP12.27□□□□□ -0.45
TPM1-227ENST00000560970 SSTR3P32745 418 aaPredicted RBP12.27□□□□□ -0.45
TPM1-227ENST00000560970 MGAT3Q09327 533 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 PPFIA1Q13136 1202 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 COL19A1Q14993 1142 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 TCEAL5Q5H9L2 206 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 WWC2Q6AWC2 1192 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 TYW1BQ6NUM6 668 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 USP17L6PQ6QN14 398 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 RPAINQ86UA6 219 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 GJD3Q8N144 294 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 PABPC5Q96DU9 382 aaKnown RBP12.27□□□□□ -0.45
TPM1-227ENST00000560970 RC3H2Q9HBD1 1191 aaKnown RBP12.27□□□□□ -0.45
TPM1-227ENST00000560970 CD320Q9NPF0 282 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 ERAP1Q9NZ08 941 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 FAM50BQ9Y247 325 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 TELO2Q9Y4R8 837 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 ZNF318Q5VUA4 2279 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 MUC6Q6W4X9 2439 aa12.27□□□□□ -0.45
TPM1-227ENST00000560970 MYO7AQ13402 2215 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 GRXCR2A6NFK2 248 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 C5orf67F2Z3F1 127 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 H3BQ06 376 aaPredicted RBP12.26□□□□□ -0.45
TPM1-227ENST00000560970 PPFIA3O75145 1194 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 RPLP2P05387 115 aaKnown RBP12.26□□□□□ -0.45
TPM1-227ENST00000560970 MARK3P27448 753 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 AK2P54819 239 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 CCT2P78371 535 aaKnown RBP12.26□□□□□ -0.45
TPM1-227ENST00000560970 MTMR1Q13613 665 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 GRIK4Q16099 956 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 NTRK3Q16288 839 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 RUFY4Q6ZNE9 571 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 RSPH3Q86UC2 560 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 FIBCD1Q8N539 461 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 KIF2CQ99661 725 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 C11orf84Q9BUA3 381 aaPredicted RBP12.26□□□□□ -0.45
TPM1-227ENST00000560970 LMAN2LQ9H0V9 348 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 TSHZ2Q9NRE2 1034 aa12.26□□□□□ -0.45
TPM1-227ENST00000560970 MBLAC1A4D2B0 266 aaPredicted RBP12.25□□□□□ -0.45
TPM1-227ENST00000560970 PRR33A8MZF0 331 aa12.25□□□□□ -0.45
TPM1-227ENST00000560970 LARGE1O95461 756 aa12.25□□□□□ -0.45
TPM1-227ENST00000560970 CHRNA1P02708 482 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms