RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 NFU1Q9UMS0 254 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 SRCAPQ6ZRS2 3230 aa11.93□□□□□ -0.5
USP3-206ENST00000558157 SPDYE2BA6NHP3 402 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 ORC4O43929 436 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 PARP1P09874 1014 aaKnown RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 SPDYE6P0CI01 402 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 PCP11498 1178 aaKnown RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 PEX19P40855 299 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 CARSP49589 748 aaKnown RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 EIF6P56537 245 aaKnown RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 PPP2R2AP63151 447 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 ZC3H12AQ5D1E8 599 aaKnown RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 RRAGBQ5VZM2 374 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 OGFOD1Q8N543 542 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 SLC44A5Q8NCS7 719 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 NELFBQ8WX92 580 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 PRMT6Q96LA8 375 aaPredicted RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 TDRD3Q9H7E2 651 aaKnown RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 PLAAQ9Y263 795 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 A6NHS1 94 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 GOLGA8AA7E2F4 631 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 OPLAHO14841 1288 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 RANBP6O60518 1105 aaKnown RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 HEXIM1O94992 359 aaKnown RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 RTN3O95197 1032 aaPredicted RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 LCA5LO95447 670 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 LMNB1P20700 586 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 HNRNPH3P31942 346 aaKnown RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 LIFRP42702 1097 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 ROR2Q01974 943 aaKnown RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 TMEM67Q5HYA8 995 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 MAATS1Q7Z4T9 603 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 CPLX4Q7Z7G2 160 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 RAB11FIP4Q86YS3 637 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 TRIM22Q8IYM9 498 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 KIRREL3Q8IZU9 778 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 CCDC197Q8NCU1 140 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 ZFAND2BQ8WV99 257 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 TBC1D31Q96DN5 1066 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 THOC1Q96FV9 657 aaKnown RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 PAIP2Q9BPZ3 127 aaKnown RBP11.92□□□□□ -0.5
USP3-206ENST00000558157 NDST4Q9H3R1 872 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 FAM198AQ9UFP1 575 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 PCDHB6Q9Y5E3 794 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 GJA3Q9Y6H8 435 aa11.92□□□□□ -0.5
USP3-206ENST00000558157 GTPBP6O43824 516 aaPredicted RBP11.91□□□□□ -0.5
USP3-206ENST00000558157 GLI1P08151 1106 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 MTMR3Q13615 1198 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 DLGAP5Q15398 846 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 IFI16Q16666 785 aaKnown RBP11.91□□□□□ -0.5
USP3-206ENST00000558157 QPCTQ16769 361 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 CCDC96Q2M329 555 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 ZFPM1Q8IX07 1006 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 SMYD4Q8IYR2 804 aaPredicted RBP11.91□□□□□ -0.5
USP3-206ENST00000558157 RNF10Q8N5U6 811 aaKnown RBP11.91□□□□□ -0.5
USP3-206ENST00000558157 IGDCC4Q8TDY8 1250 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 ZBTB10Q96DT7 871 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 CCDC42Q96M95 316 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 LY9Q9HBG7 655 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 EPB41L5Q9HCM4 733 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 RBM12Q9NTZ6 932 aaKnown RBP11.91□□□□□ -0.5
USP3-206ENST00000558157 SLC5A4Q9NY91 659 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 UTRNP46939 3433 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 TRIM75PA6NK02 468 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 ASAP2O43150 1006 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 PJA2O43164 708 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 AP1G2O75843 785 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 FAM153BP0C7A2 387 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 TRIM21P19474 475 aaKnown RBP11.91□□□□□ -0.5
USP3-206ENST00000558157 HPDP32754 393 aaPredicted RBP11.91□□□□□ -0.5
USP3-206ENST00000558157 MATR3P43243 847 aaKnown RBP eCLIP11.91□□□□□ -0.56e-9■■□□□ 14.1
USP3-206ENST00000558157 GMPSP49915 693 aaPredicted RBP11.91□□□□□ -0.5
USP3-206ENST00000558157 TCP10Q12799 353 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 CUL1Q13616 776 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 FAM153CQ494X1 144 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 FAM47AQ5JRC9 791 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 C16orf86Q6ZW13 317 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 USP49Q70CQ1 688 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 IDI2Q9BXS1 227 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.91□□□□□ -0.5
USP3-206ENST00000558157 FAM153AQ9UHL3 310 aa11.91□□□□□ -0.5
USP3-206ENST00000558157 A0A087X0B3 334 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 CLRN2A0PK11 232 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 DRD4P21917 467 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 RPS12P25398 132 aaKnown RBP11.9□□□□□ -0.5
USP3-206ENST00000558157 GUCY2DQ02846 1103 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 CWF19L1Q69YN2 538 aaKnown RBP11.9□□□□□ -0.5
USP3-206ENST00000558157 RAPGEF5Q92565 580 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 CHMP6Q96FZ7 201 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 UBAC1Q9BSL1 405 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 SLC26A6Q9BXS9 759 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 IFIH1Q9BYX4 1025 aaKnown RBP11.9□□□□□ -0.5
USP3-206ENST00000558157 FAM217BQ9NTX9 383 aaPredicted RBP11.9□□□□□ -0.5
USP3-206ENST00000558157 MAGEC2Q9UBF1 373 aaPredicted RBP11.9□□□□□ -0.5
USP3-206ENST00000558157 TFR2Q9UP52 801 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 CAPN6Q9Y6Q1 641 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 DUSP10Q9Y6W6 482 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 TNKSO95271 1327 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 H0YGN5 161 aa11.9□□□□□ -0.5
USP3-206ENST00000558157 DEXIO95424 95 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms