RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 NSUN6Q8TEA1 469 aaKnown RBP13.99□□□□□ -0.17
SHMT2-229ENST00000557348 GPRASP2Q96D09 838 aa13.99□□□□□ -0.17
SHMT2-229ENST00000557348 CNOT6LQ96LI5 555 aaKnown RBP13.99□□□□□ -0.17
SHMT2-229ENST00000557348 RMDN3Q96TC7 470 aa13.99□□□□□ -0.17
SHMT2-229ENST00000557348 PXMP2Q9NR77 195 aa13.99□□□□□ -0.17
SHMT2-229ENST00000557348 KCNH7Q9NS40 1196 aa13.99□□□□□ -0.17
SHMT2-229ENST00000557348 ODF2LQ9ULJ1 636 aa13.99□□□□□ -0.17
SHMT2-229ENST00000557348 SNCAIPQ9Y6H5 919 aa13.99□□□□□ -0.17
SHMT2-229ENST00000557348 PHIPQ8WWQ0 1821 aa13.99□□□□□ -0.17
SHMT2-229ENST00000557348 UNCXA6NJT0 531 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 EFCAB8A8MWE9 144 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 CXCL11O14625 94 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 DKC1O60832 514 aaKnown RBP eCLIP13.98□□□□□ -0.17
SHMT2-229ENST00000557348 MFAP3LO75121 409 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 P4HBP07237 508 aaKnown RBP13.98□□□□□ -0.17
SHMT2-229ENST00000557348 PMS1P54277 932 aaKnown RBP13.98□□□□□ -0.17
SHMT2-229ENST00000557348 UBXN1Q04323 297 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 TMCO3Q6UWJ1 677 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 NSMFQ6X4W1 530 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-229ENST00000557348 MIER3Q7Z3K6 550 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 ERO1BQ86YB8 467 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 IRF2BP1Q8IU81 584 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 TC2NQ8N9U0 490 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 PDCD2LQ9BRP1 358 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 TUBGCP2Q9BSJ2 902 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 TIPINQ9BVW5 301 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 OLFML3Q9NRN5 406 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 HOMER2Q9NSB8 354 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 TAB2Q9NYJ8 693 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 COL20A1Q9P218 1284 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 ZNF214Q9UL59 606 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-229ENST00000557348 UBE4BO95155 1302 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 PFASO15067 1338 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 SLITRK3O94933 977 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 ZRANB2O95218 330 aaKnown RBP eCLIP13.98□□□□□ -0.171e-7■□□□□ 9.4
SHMT2-229ENST00000557348 LYPLA2O95372 231 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 ITGB5P18084 799 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 MTIF2P46199 727 aaKnown RBP13.98□□□□□ -0.17
SHMT2-229ENST00000557348 KRT76Q01546 638 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 PABPC4Q13310 644 aaKnown RBP eCLIP13.98□□□□□ -0.172e-6■■■■■ 28.7
SHMT2-229ENST00000557348 GIT2Q14161 759 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 PRAMEF18Q5VWM3 479 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 TPH2Q8IWU9 490 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 VPS16Q9H269 839 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 BHMT2Q9H2M3 363 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 SEMA6BQ9H3T3 888 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 UNC45AQ9H3U1 944 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 ZSWIM4Q9H7M6 989 aa13.98□□□□□ -0.17
SHMT2-229ENST00000557348 AGO4Q9HCK5 861 aaKnown RBP13.98□□□□□ -0.17
SHMT2-229ENST00000557348 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-229ENST00000557348 SPDYE16A6NNV3 312 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-229ENST00000557348 EML1O00423 815 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 EIF3DO15371 548 aaKnown RBP eCLIP13.97□□□□□ -0.17
SHMT2-229ENST00000557348 TEX33O43247 280 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 ARP10275 920 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 EPHX2P34913 555 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 UBXN2AP68543 259 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 CYP4A11Q02928 519 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 PPP2R3AQ06190 1150 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 MAN2A1Q16706 1144 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 BMT2Q1RMZ1 405 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 TSR1Q2NL82 804 aaKnown RBP13.97□□□□□ -0.17
SHMT2-229ENST00000557348 GNPTABQ3T906 1256 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 ZCWPW2Q504Y3 356 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 ARSHQ5FYA8 562 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 FIGNQ5HY92 759 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 LBX2Q6XYB7 198 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 PNMA8AQ86V59 439 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-229ENST00000557348 DNERQ8NFT8 737 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 DYDC2Q96IM9 177 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 IWS1Q96ST2 819 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 UBXN6Q9BZV1 441 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 DBR1Q9UK59 544 aaKnown RBP13.97□□□□□ -0.17
SHMT2-229ENST00000557348 PCDHA2Q9Y5H9 948 aa13.97□□□□□ -0.17
SHMT2-229ENST00000557348 B4DLN1 442 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 CHMP2AO43633 222 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 FAM13AO94988 1023 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 TUBBP07437 444 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 FECHP22830 423 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 ETF1P62495 437 aaKnown RBP13.96□□□□□ -0.17
SHMT2-229ENST00000557348 ALCAMQ13740 583 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 TUBB2AQ13885 445 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 SLC30A10Q6XR72 485 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 ARMC9Q7Z3E5 817 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 SLC17A8Q8NDX2 589 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 ZNF507Q8TCN5 953 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 UBXN4Q92575 508 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 TAAR1Q96RJ0 339 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 ERGIC2Q96RQ1 377 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 REEP2Q9BRK0 252 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 LXNQ9BS40 222 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 TUBB2BQ9BVA1 445 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 NOC4LQ9BVI4 516 aaKnown RBP13.96□□□□□ -0.17
SHMT2-229ENST00000557348 DNAI1Q9UI46 699 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 PARP14Q460N5 1801 aa13.96□□□□□ -0.17
SHMT2-229ENST00000557348 PAPPA2Q9BXP8 1791 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 SPDYE5A6NIY4 337 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 WDR64B1ANS9 1081 aa13.95□□□□□ -0.18
SHMT2-229ENST00000557348 PES1O00541 588 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms