RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ZNF302Q9NR11 478 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 DISC1Q9NRI5 854 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 FOXD4L1Q9NU39 408 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 PCDH10Q9P2E7 1040 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 WNT7AO00755 349 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 TIMP1P01033 207 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 HSP90AA1P07900 732 aaKnown RBP15.33■□□□□ 0.04
SHMT2-228ENST00000557302 CYP2C9P11712 490 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 SLC26A2P50443 739 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 MDM2Q00987 491 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-228ENST00000557302 ORC2Q13416 577 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-228ENST00000557302 CALCRLQ16602 461 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 SWSAP1Q6NVH7 229 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 CCDC60Q8IWA6 550 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-228ENST00000557302 SLFN12Q8IYM2 578 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 RDM1Q8NG50 284 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 AFAP1L1Q8TED9 768 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 HAS1Q92839 578 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 TNPO1Q92973 898 aaKnown RBP15.33■□□□□ 0.04
SHMT2-228ENST00000557302 NOC4LQ9BVI4 516 aaKnown RBP15.33■□□□□ 0.04
SHMT2-228ENST00000557302 PPP1R12CQ9BZL4 782 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 HIPK3Q9H422 1215 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 RNPEPQ9H4A4 650 aa15.33■□□□□ 0.04
SHMT2-228ENST00000557302 VPS37CA5D8V6 355 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-228ENST00000557302 GNAT1P11488 350 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 ITGB8P26012 769 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 HOXC8P31273 242 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 MCM7P33993 719 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 PPFIA1Q13136 1202 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 TTC38Q5R3I4 469 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 PDXDC2PQ6P474 469 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 CHRDL2Q6WN34 429 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 MIER3Q7Z3K6 550 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 BADQ92934 168 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 ATP6V0A1Q93050 837 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 GDF15Q99988 308 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 SETD4Q9NVD3 440 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 GABBR1Q9UBS5 961 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 VAV3Q9UKW4 847 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 TRPC6Q9Y210 931 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 NRCAMQ92823 1304 aa15.32■□□□□ 0.04
SHMT2-228ENST00000557302 ZNF200P98182 395 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-228ENST00000557302 PTK7Q13308 1070 aa15.31■□□□□ 0.04
SHMT2-228ENST00000557302 PPP2R5CQ13362 524 aa15.31■□□□□ 0.04
SHMT2-228ENST00000557302 BFSP2Q13515 415 aa15.31■□□□□ 0.04
SHMT2-228ENST00000557302 HIC1Q14526 733 aa15.31■□□□□ 0.04
SHMT2-228ENST00000557302 PLCB4Q15147 1175 aa15.31■□□□□ 0.04
SHMT2-228ENST00000557302 ZNF174Q15697 407 aa15.31■□□□□ 0.04
SHMT2-228ENST00000557302 GRIK4Q16099 956 aa15.31■□□□□ 0.04
SHMT2-228ENST00000557302 HABP4Q5JVS0 413 aaKnown RBP15.31■□□□□ 0.04
SHMT2-228ENST00000557302 B3GNT9Q6UX72 402 aa15.31■□□□□ 0.04
SHMT2-228ENST00000557302 CKAP2LQ8IYA6 745 aa15.31■□□□□ 0.04
SHMT2-228ENST00000557302 CCDC155Q8N6L0 562 aa15.31■□□□□ 0.04
SHMT2-228ENST00000557302 LMBR1Q8WVP7 490 aa15.31■□□□□ 0.04
SHMT2-228ENST00000557302 CTAGE1Q96RT6 745 aa15.31■□□□□ 0.04
SHMT2-228ENST00000557302 MAFBQ9Y5Q3 323 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-228ENST00000557302 POTEB3A0JP26 581 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 INSRRP14616 1297 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 SYT1P21579 422 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 CYP2C18P33260 490 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 UMODL1Q5DID0 1318 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 MFSD5Q6N075 450 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 POTEBQ6S5H4 581 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 SERINC5Q86VE9 423 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 TMEM199Q8N511 208 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 RETREG2Q8NC44 543 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 CAGE1Q8TC20 777 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 ATP8B4Q8TF62 1192 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 MTMR9Q96QG7 549 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 TMEM60Q9H2L4 133 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 IGSF9BQ9UPX0 1349 aa15.3■□□□□ 0.04
SHMT2-228ENST00000557302 RRN3P2A6NIE6 340 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 PITPNM1O00562 1244 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 TREHO43280 583 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 HBP1O60381 514 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 OR52Z1P0C646 297 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 TXKP42681 527 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 TOB1P50616 345 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-228ENST00000557302 IGBP1P78318 339 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 FPGSQ05932 587 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 NBR1Q14596 966 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 RILPL1Q5EBL4 403 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 NCAPH2Q6IBW4 605 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 BRAPQ7Z569 592 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 DHX38Q92620 1227 aaKnown RBP15.29■□□□□ 0.04
SHMT2-228ENST00000557302 FAM167AQ96KS9 214 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 UBE2OQ9C0C9 1292 aaKnown RBP15.29■□□□□ 0.04
SHMT2-228ENST00000557302 WNT8AQ9H1J5 351 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 TTC12Q9H892 705 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-228ENST00000557302 TUBE1Q9UJT0 475 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 PCDHA12Q9UN75 941 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 SZT2Q5T011 3432 aa15.29■□□□□ 0.04
SHMT2-228ENST00000557302 EML1O00423 815 aa15.28■□□□□ 0.04
SHMT2-228ENST00000557302 ATP4AP20648 1035 aa15.28■□□□□ 0.04
SHMT2-228ENST00000557302 BMP8BP34820 402 aa15.28■□□□□ 0.04
SHMT2-228ENST00000557302 CCL23P55773 120 aa15.28■□□□□ 0.04
SHMT2-228ENST00000557302 ADAM17P78536 824 aa15.28■□□□□ 0.04
SHMT2-228ENST00000557302 SPIRE1Q08AE8 756 aa15.28■□□□□ 0.04
SHMT2-228ENST00000557302 PPIGQ13427 754 aaKnown RBP eCLIP15.28■□□□□ 0.041e-10■■□□□ 12.6
SHMT2-228ENST00000557302 UGCGQ16739 394 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms