RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	KAT14	Q9H8E8	782 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	CLEC1B	Q9P126	229 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	ADGRA3	Q8IWK6	1321 aa		10.05	□□□□□ -0.8
SYNE2-222	ENST00000556725	KMT2E	Q8IZD2	1858 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725		B4E1Z4	1266 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	LOC730098	B7Z3J9	87 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	CAND2	O75155	1236 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	EYA4	O95677	639 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	MMP1	P03956	469 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	PARP1	P09874	1014 aa	Known RBP	10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	NDUFV1	P49821	464 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	VCP	P55072	806 aa	Known RBP	10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	ARHGAP4	P98171	946 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	GHRHR	Q02643	423 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	SEMA3F	Q13275	785 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	BTG3	Q14201	252 aa	Predicted RBP	10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	RUFY4	Q6ZNE9	571 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	CYFIP1	Q7L576	1253 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	FCHSD1	Q86WN1	690 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	FBXL6	Q8N531	539 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	ENAH	Q8N8S7	591 aa	Predicted RBP	10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	SPPL3	Q8TCT6	385 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	AMN	Q9BXJ7	453 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	EHMT1	Q9H9B1	1298 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	RTEL1	Q9NZ71	1219 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	ZSWIM5	Q9P217	1185 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	PCDHGC5	Q9Y5F6	944 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	ZMYM6	O95789	1325 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	VPS13A	Q96RL7	3174 aa		10.04	□□□□□ -0.8
SYNE2-222	ENST00000556725	KIAA1671	Q9BY89	1806 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	GFRA3	O60609	400 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	PPP1R37	O75864	691 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	DGKI	O75912	1065 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	GLP2R	O95838	553 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	ITGB1	P05556	798 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	GNAT1	P11488	350 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	PC	P11498	1178 aa	Known RBP	10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	CCND2	P30279	289 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	TTC3	P53804	2025 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	PDE1A	P54750	535 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	MRPS9	P82933	396 aa	Known RBP	10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	LPIN1	Q14693	890 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	SLC35G1	Q2M3R5	365 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	UTP14C	Q5TAP6	766 aa	Known RBP	10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	ANKRD45	Q5TZF3	282 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	RBM23	Q86U06	439 aa	Known RBP	10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	RTN4RL1	Q86UN2	441 aa	Predicted RBP	10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	IQCA1	Q86XH1	822 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	SUGP1	Q8IWZ8	645 aa	Known RBP	10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	SMRP1	Q8NCR6	262 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	LMBR1	Q8WVP7	490 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	LINC01599	Q8WXQ3	324 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	KAT6A	Q92794	2004 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	MTMR8	Q96EF0	704 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	GPR20	Q99678	358 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	USP26	Q9BXU7	913 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	RNF41	Q9H4P4	317 aa	Predicted RBP	10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	MYO15A	Q9UKN7	3530 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	BARX2	Q9UMQ3	279 aa	Predicted RBP	10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	RWDD3	Q9Y3V2	267 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	PCDHA1	Q9Y5I3	950 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	MRPL42	Q9Y6G3	142 aa	Known RBP	10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	CCDC171	Q6TFL3	1326 aa		10.03	□□□□□ -0.8
SYNE2-222	ENST00000556725	TRIM6-TRIM34	B2RNG4	842 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	SPATA31C2	B4DYI2	1134 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	KLRF2	D3W0D1	207 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	NOP56	O00567	594 aa	Known RBP	10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	ZNF213	O14771	459 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	AVPR2	P30518	371 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	NRIP1	P48552	1158 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	RBM10	P98175	930 aa	Known RBP	10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	SP4	Q02446	784 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	MGAT3	Q09327	533 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	CBX2	Q14781	532 aa	Predicted RBP	10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	EFHB	Q8N7U6	833 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	KLHL23	Q8NBE8	558 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	ZBTB10	Q96DT7	871 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	ASIC4	Q96FT7	647 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	RPGRIP1	Q96KN7	1286 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	PLVAP	Q9BX97	442 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	AGO3	Q9H9G7	860 aa	Known RBP	10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	MAP3K20	Q9NYL2	800 aa	Known RBP	10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	MAD2L2	Q9UI95	211 aa		10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	USP15	Q9Y4E8	981 aa	Predicted RBP	10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	BAZ2B	Q9UIF8	2168 aa	Known RBP	10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	10.02	□□□□□ -0.81
SYNE2-222	ENST00000556725		H0Y858	1186 aa		10.01	□□□□□ -0.81
SYNE2-222	ENST00000556725	GCOM1	H8Y6P7	765 aa	Predicted RBP	10.01	□□□□□ -0.81
SYNE2-222	ENST00000556725	PER2	O15055	1255 aa		10.01	□□□□□ -0.81
SYNE2-222	ENST00000556725	ZBTB5	O15062	677 aa		10.01	□□□□□ -0.81
SYNE2-222	ENST00000556725	PPFIA3	O75145	1194 aa		10.01	□□□□□ -0.81
SYNE2-222	ENST00000556725	PDGFB	P01127	241 aa	Predicted RBP	10.01	□□□□□ -0.81
SYNE2-222	ENST00000556725	POLR2M	P0CAP2	368 aa		10.01	□□□□□ -0.81
SYNE2-222	ENST00000556725	ICAM3	P32942	547 aa		10.01	□□□□□ -0.81
SYNE2-222	ENST00000556725	GATM	P50440	423 aa		10.01	□□□□□ -0.81
SYNE2-222	ENST00000556725	COASY	Q13057	564 aa		10.01	□□□□□ -0.81
SYNE2-222	ENST00000556725	PKN1	Q16512	942 aa		10.01	□□□□□ -0.81
SYNE2-222	ENST00000556725	PAN2	Q504Q3	1202 aa	Known RBP	10.01	□□□□□ -0.81
SYNE2-222	ENST00000556725	CCDC178	Q5BJE1	867 aa		10.01	□□□□□ -0.81

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