RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 PPFIA2O75334 1257 aa5.8□□□□□ -1.48
SCFD1-218ENST00000556256 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.8□□□□□ -1.48
SCFD1-218ENST00000556256 NT5DC4Q86YG4 428 aa5.8□□□□□ -1.48
SCFD1-218ENST00000556256 C12orf65Q9H3J6 166 aaKnown RBP5.8□□□□□ -1.48
SCFD1-218ENST00000556256 NR2E1Q9Y466 385 aa5.8□□□□□ -1.48
SCFD1-218ENST00000556256 NUB1Q9Y5A7 615 aa5.8□□□□□ -1.48
SCFD1-218ENST00000556256 SMAD7O15105 426 aaKnown RBP5.79□□□□□ -1.48
SCFD1-218ENST00000556256 ADH4P08319 380 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 RRADP55042 308 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 SPIRE1Q08AE8 756 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 MAP4K2Q12851 820 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 HNRNPA0Q13151 305 aaKnown RBP5.79□□□□□ -1.48
SCFD1-218ENST00000556256 ZMAT1Q5H9K5 638 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 LARP1BQ659C4 914 aaKnown RBP5.79□□□□□ -1.48
SCFD1-218ENST00000556256 PCSK4Q6UW60 755 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 ZNF627Q7L945 461 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 KCTD13Q8WZ19 329 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 CRAMP1Q96RY5 1269 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 AGAP2Q99490 1192 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 KCNJ15Q99712 375 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 PHF20Q9BVI0 1012 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 SLC39A2Q9NP94 309 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 DSEQ9UL01 958 aa5.79□□□□□ -1.48
SCFD1-218ENST00000556256 DDAH1O94760 285 aa5.78□□□□□ -1.48
SCFD1-218ENST00000556256 MAKP20794 623 aa5.78□□□□□ -1.48
SCFD1-218ENST00000556256 HIBADHP31937 336 aaKnown RBP5.78□□□□□ -1.48
SCFD1-218ENST00000556256 EPHA5P54756 1037 aa5.78□□□□□ -1.48
SCFD1-218ENST00000556256 FOXL1Q12952 345 aa5.78□□□□□ -1.48
SCFD1-218ENST00000556256 HABP4Q5JVS0 413 aaKnown RBP5.78□□□□□ -1.48
SCFD1-218ENST00000556256 MRM1Q6IN84 353 aaKnown RBP5.78□□□□□ -1.48
SCFD1-218ENST00000556256 MRGPRGQ86SM5 289 aa5.78□□□□□ -1.48
SCFD1-218ENST00000556256 ZNF483Q8TF39 744 aaPredicted RBP5.78□□□□□ -1.48
SCFD1-218ENST00000556256 ZNF703Q9H7S9 590 aaPredicted RBP5.78□□□□□ -1.48
SCFD1-218ENST00000556256 DMRT1Q9Y5R6 373 aa5.78□□□□□ -1.48
SCFD1-218ENST00000556256 DLX3O60479 287 aa5.77□□□□□ -1.49
SCFD1-218ENST00000556256 GNAT1P11488 350 aa5.77□□□□□ -1.49
SCFD1-218ENST00000556256 RPS19P39019 145 aaKnown RBP5.77□□□□□ -1.49
SCFD1-218ENST00000556256 PPP2R2AP63151 447 aa5.77□□□□□ -1.49
SCFD1-218ENST00000556256 NFYCQ13952 458 aa5.77□□□□□ -1.49
SCFD1-218ENST00000556256 TBR1Q16650 682 aa5.77□□□□□ -1.49
SCFD1-218ENST00000556256 RSPO2Q6UXX9 243 aaPredicted RBP5.77□□□□□ -1.49
SCFD1-218ENST00000556256 MICAL1Q8TDZ2 1067 aa5.77□□□□□ -1.49
SCFD1-218ENST00000556256 SCYL1Q96KG9 808 aa5.77□□□□□ -1.49
SCFD1-218ENST00000556256 ACTR10Q9NZ32 417 aa5.77□□□□□ -1.49
SCFD1-218ENST00000556256 GRK2P25098 689 aa5.76□□□□□ -1.49
SCFD1-218ENST00000556256 MSX2P35548 267 aaPredicted RBP5.76□□□□□ -1.49
SCFD1-218ENST00000556256 GRK3P35626 688 aa5.76□□□□□ -1.49
SCFD1-218ENST00000556256 ETV4P43268 484 aa5.76□□□□□ -1.49
SCFD1-218ENST00000556256 HDLBPQ00341 1268 aaKnown RBP5.76□□□□□ -1.49
SCFD1-218ENST00000556256 DPP8Q6V1X1 898 aaPredicted RBP5.76□□□□□ -1.49
SCFD1-218ENST00000556256 LBX2Q6XYB7 198 aa5.76□□□□□ -1.49
SCFD1-218ENST00000556256 USP53Q70EK8 1073 aa5.76□□□□□ -1.49
SCFD1-218ENST00000556256 KCTD1Q719H9 257 aa5.76□□□□□ -1.49
SCFD1-218ENST00000556256 CFHR4Q92496 578 aa5.76□□□□□ -1.49
SCFD1-218ENST00000556256 IER2Q9BTL4 223 aa5.76□□□□□ -1.49
SCFD1-218ENST00000556256 TLR9Q9NR96 1032 aa5.76□□□□□ -1.49
SCFD1-218ENST00000556256 PLA2G3Q9NZ20 509 aa5.76□□□□□ -1.49
SCFD1-218ENST00000556256 MRVI1Q9Y6F6 885 aa5.76□□□□□ -1.49
SCFD1-218ENST00000556256 ARHGAP6O43182 974 aa5.75□□□□□ -1.49
SCFD1-218ENST00000556256 VAMP1P23763 118 aa5.75□□□□□ -1.49
SCFD1-218ENST00000556256 DNAJA1P31689 397 aaKnown RBP5.75□□□□□ -1.49
SCFD1-218ENST00000556256 DBPQ10586 325 aaPredicted RBP5.75□□□□□ -1.49
SCFD1-218ENST00000556256 DPY19L2P1Q6NXN4 242 aa5.75□□□□□ -1.49
SCFD1-218ENST00000556256 CLIP3Q96DZ5 547 aa5.75□□□□□ -1.49
SCFD1-218ENST00000556256 ZDHHC5Q9C0B5 715 aa5.75□□□□□ -1.49
SCFD1-218ENST00000556256 WDR26Q9H7D7 661 aa5.75□□□□□ -1.49
SCFD1-218ENST00000556256 AURKAIP1Q9NWT8 199 aaPredicted RBP5.75□□□□□ -1.49
SCFD1-218ENST00000556256 CEP72Q9P209 647 aa5.75□□□□□ -1.49
SCFD1-218ENST00000556256 PUF60Q9UHX1 559 aaKnown RBP5.75□□□□□ -1.49
SCFD1-218ENST00000556256 A0A1W2PQU0 124 aa5.74□□□□□ -1.49
SCFD1-218ENST00000556256 KRT4P19013 534 aa5.74□□□□□ -1.49
SCFD1-218ENST00000556256 WDR72Q3MJ13 1102 aa5.74□□□□□ -1.49
SCFD1-218ENST00000556256 KCNT2Q6UVM3 1135 aa5.74□□□□□ -1.49
SCFD1-218ENST00000556256 LARP4Q71RC2 724 aaKnown RBP eCLIP5.74□□□□□ -1.49
SCFD1-218ENST00000556256 KIAA1683Q9H0B3 1180 aa5.74□□□□□ -1.49
SCFD1-218ENST00000556256 ACBD3Q9H3P7 528 aa5.74□□□□□ -1.49
SCFD1-218ENST00000556256 HECAQ9UBI9 543 aaPredicted RBP5.74□□□□□ -1.49
SCFD1-218ENST00000556256 RAMP2O60895 175 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 PDE6AP16499 860 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 ATF4P18848 351 aaPredicted RBP5.73□□□□□ -1.49
SCFD1-218ENST00000556256 KIZQ2M2Z5 673 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 SLC10A6Q3KNW5 377 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 Q6ZPA2 131 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 SGMS1Q86VZ5 419 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 ULK2Q8IYT8 1036 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 GPR135Q8IZ08 494 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 SH3RF2Q8TEC5 729 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 DCAF4Q8WV16 495 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 CD244Q9BZW8 370 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 SLC2A4RGQ9NR83 387 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 INPP5FQ9Y2H2 1132 aa5.73□□□□□ -1.49
SCFD1-218ENST00000556256 REXO2Q9Y3B8 237 aaKnown RBP5.73□□□□□ -1.49
SCFD1-218ENST00000556256 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.72□□□□□ -1.49
SCFD1-218ENST00000556256 HMGCRP04035 888 aa5.72□□□□□ -1.49
SCFD1-218ENST00000556256 KCNQ1P51787 676 aa5.72□□□□□ -1.49
SCFD1-218ENST00000556256 HHEXQ03014 270 aa5.72□□□□□ -1.49
SCFD1-218ENST00000556256 FXNQ16595 210 aa5.72□□□□□ -1.49
SCFD1-218ENST00000556256 TNNI3KQ59H18 835 aa5.72□□□□□ -1.49
SCFD1-218ENST00000556256 USP30Q70CQ3 517 aa5.72□□□□□ -1.49
SCFD1-218ENST00000556256 EEPD1Q7L9B9 569 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms