RNA–Protein interactions for RNA: ENST00000555880.5

TDP1-213, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5 BASIC

Gene TDP1, Length 1,894 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-213ENST00000555880 HERC4Q5GLZ8 1057 aaPredicted RBP7.7□□□□□ -1.18
TDP1-213ENST00000555880 HYIQ5T013 277 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 SND1Q7KZF4 910 aaKnown RBP eCLIP7.7□□□□□ -1.18
TDP1-213ENST00000555880 CLEC10AQ8IUN9 316 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 GSPT2Q8IYD1 628 aaKnown RBP7.7□□□□□ -1.18
TDP1-213ENST00000555880 FLAD1Q8NFF5 587 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 HAS1Q92839 578 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 CCDC17Q96LX7 622 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 GDAP1L1Q96MZ0 367 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 NUDT12Q9BQG2 462 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 TMX4Q9H1E5 349 aaPredicted RBP7.7□□□□□ -1.18
TDP1-213ENST00000555880 NLRC4Q9NPP4 1024 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 USP40Q9NVE5 1235 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 GOLGA6AQ9NYA3 693 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 ATP6V0A2Q9Y487 856 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 LTBP1Q14766 1721 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 USP17L10C9JJH3 530 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 GOLGA8KD6RF30 607 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 PLSCR1O15162 318 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 CETN3O15182 167 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 NKRFO15226 690 aaKnown RBP eCLIP7.7□□□□□ -1.18
TDP1-213ENST00000555880 PPP1R11O60927 126 aaPredicted RBP7.7□□□□□ -1.18
TDP1-213ENST00000555880 HSF2BPO75031 334 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 SYF2O95926 243 aaKnown RBP7.7□□□□□ -1.18
TDP1-213ENST00000555880 TNFRSF8P28908 595 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 CXCR5P32302 372 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 SLC16A2P36021 539 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 MARSP56192 900 aaKnown RBP7.7□□□□□ -1.18
TDP1-213ENST00000555880 PPFIA1Q13136 1202 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 ASIC2Q16515 512 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 ASTE1Q2TB18 679 aaPredicted RBP7.7□□□□□ -1.18
TDP1-213ENST00000555880 EDRF1Q3B7T1 1238 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 HGSNATQ68CP4 663 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 TTBK2Q6IQ55 1244 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 KCTD1Q719H9 257 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 TRIM59Q8IWR1 403 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 NELFCDQ8IXH7 590 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 SP8Q8IXZ3 490 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 IFT20Q8IY31 132 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 NLGN1Q8N2Q7 840 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 ANKRD13CQ8N6S4 541 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 GLIS3Q8NEA6 775 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 TEKT1Q969V4 418 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 TRERF1Q96PN7 1200 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 PSMB7Q99436 277 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 LRRC1Q9BTT6 524 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.7□□□□□ -1.18
TDP1-213ENST00000555880 SLC4A5Q9BY07 1137 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 TRIM34Q9BYJ4 488 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 ZC3H12CQ9C0D7 883 aaKnown RBP7.7□□□□□ -1.18
TDP1-213ENST00000555880 ZHX3Q9H4I2 956 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 TBC1D7Q9P0N9 293 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 PCDHA1Q9Y5I3 950 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 GREB1LQ9C091 1923 aaPredicted RBP7.7□□□□□ -1.18
TDP1-213ENST00000555880 PITPNM2Q9BZ72 1349 aa7.7□□□□□ -1.18
TDP1-213ENST00000555880 GRID2IPA4D2P6 1211 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 POTECB2RU33 542 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 E9PMD0 336 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 NCK2O43639 380 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 BUB1O43683 1085 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 PRPF6O94906 941 aaKnown RBP7.69□□□□□ -1.18
TDP1-213ENST00000555880 MYBL2P10244 700 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 SHMT1P34896 483 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 KLHL30Q0D2K2 578 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 KCNMA1Q12791 1236 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 AP3B2Q13367 1082 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 NNTQ13423 1086 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 SF3B2Q13435 895 aaKnown RBP7.69□□□□□ -1.18
TDP1-213ENST00000555880 ADAM9Q13443 819 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 NAB2Q15742 525 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 SLC18A3Q16572 532 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 ECM1Q16610 540 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 IFI16Q16666 785 aaKnown RBP7.69□□□□□ -1.18
TDP1-213ENST00000555880 C10orf76Q5T2E6 689 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 ALS2CLQ60I27 953 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 MOXD1Q6UVY6 613 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 GBP6Q6ZN66 633 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 DCAF4Q8WV16 495 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 TAF4BQ92750 862 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 MTMR8Q96EF0 704 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 TLR10Q9BXR5 811 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 ANO3Q9BYT9 981 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 EHD4Q9H223 541 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 RASSF4Q9H2L5 321 aa7.69□□□□□ -1.18
TDP1-213ENST00000555880 DDX4Q9NQI0 724 aaKnown RBP7.69□□□□□ -1.18
TDP1-213ENST00000555880 RRP15Q9Y3B9 282 aaKnown RBP7.69□□□□□ -1.18
TDP1-213ENST00000555880 BZW2Q9Y6E2 419 aaKnown RBP7.69□□□□□ -1.18
TDP1-213ENST00000555880 CYP3A7-CYP3A51PA0A087WV96 503 aa7.68□□□□□ -1.18
TDP1-213ENST00000555880 A6NNZ2 444 aa7.68□□□□□ -1.18
TDP1-213ENST00000555880 USP17L15C9J2P7 530 aa7.68□□□□□ -1.18
TDP1-213ENST00000555880 USP17L13C9JLJ4 530 aa7.68□□□□□ -1.18
TDP1-213ENST00000555880 BHMG1C9JSJ3 638 aaPredicted RBP7.68□□□□□ -1.18
TDP1-213ENST00000555880 USP17L11C9JVI0 530 aa7.68□□□□□ -1.18
TDP1-213ENST00000555880 USP17L18D6R9N7 530 aa7.68□□□□□ -1.18
TDP1-213ENST00000555880 USP17L22D6RA61 530 aa7.68□□□□□ -1.18
TDP1-213ENST00000555880 USP17L17D6RBQ6 530 aa7.68□□□□□ -1.18
TDP1-213ENST00000555880 USP17L19D6RCP7 530 aa7.68□□□□□ -1.18
TDP1-213ENST00000555880 USP17L20D6RJB6 530 aa7.68□□□□□ -1.18
TDP1-213ENST00000555880 EDIL3O43854 480 aa7.68□□□□□ -1.18
TDP1-213ENST00000555880 PPFIA4O75335 1185 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms