RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 KLRC3Q07444 240 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 EZH2Q15910 746 aaKnown RBP8.9□□□□□ -0.98
SYNE2-220ENST00000555612 SWSAP1Q6NVH7 229 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 RWDD4Q6NW29 188 aaKnown RBP8.9□□□□□ -0.98
SYNE2-220ENST00000555612 PRPF38AQ8NAV1 312 aaKnown RBP8.9□□□□□ -0.98
SYNE2-220ENST00000555612 MCUR1Q96AQ8 359 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 NEDD4P46934 1319 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 CPSF1Q10570 1443 aaKnown RBP8.9□□□□□ -0.98
SYNE2-220ENST00000555612 A0A087WWV3 80 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 PRELPP51888 382 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 SEPT6Q14141 434 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 CDO1Q16878 200 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 ZNF667Q5HYK9 610 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 CCDC13Q8IYE1 715 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 PPFIBP2Q8ND30 876 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 TBC1D16Q8TBP0 767 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 SCAF8Q9UPN6 1271 aaKnown RBP8.9□□□□□ -0.98
SYNE2-220ENST00000555612 KBTBD13C9JR72 458 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 CLDN3O15551 220 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 CELF2O95319 508 aaKnown RBP8.9□□□□□ -0.98
SYNE2-220ENST00000555612 DPEP1P16444 411 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 EHHADHQ08426 723 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 PRR5LQ6MZQ0 368 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 CDKL2Q92772 493 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 NCAPGQ9BPX3 1015 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 PLCB1Q9NQ66 1216 aa8.9□□□□□ -0.98
SYNE2-220ENST00000555612 RPAP1Q9BWH6 1393 aaPredicted RBP8.9□□□□□ -0.99
SYNE2-220ENST00000555612 PRPSAP2O60256 369 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 GARSP41250 739 aaKnown RBP8.9□□□□□ -0.99
SYNE2-220ENST00000555612 FKBP3Q00688 224 aaKnown RBP8.9□□□□□ -0.99
SYNE2-220ENST00000555612 MAP7Q14244 749 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 KRT33BQ14525 404 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 ZNF394Q53GI3 561 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 RAPH1Q70E73 1250 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 TBC1D10CQ8IV04 446 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 ATP6V1E2Q96A05 226 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 ZFYVE28Q9HCC9 887 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 TMEM63CQ9P1W3 806 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 KIF1BO60333 1816 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 ASB14A6NK59 587 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 CYP2B6P20813 491 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 LIFRP42702 1097 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 KCTD6Q8NC69 237 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 TBC1D22BQ9NU19 505 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.9□□□□□ -0.99
SYNE2-220ENST00000555612 GABBR1Q9UBS5 961 aa8.9□□□□□ -0.99
SYNE2-220ENST00000555612 RGS16O15492 202 aaPredicted RBP8.89□□□□□ -0.99
SYNE2-220ENST00000555612 HUS1O60921 280 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 CIITAP33076 1130 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 KCNJ6P48051 423 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 TNFAIP2Q03169 654 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 SCARF1Q14162 830 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 TMTC3Q6ZXV5 915 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 STAG1Q8WVM7 1258 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.89□□□□□ -0.993e-8■■■■■ 70.6
SYNE2-220ENST00000555612 STX2P32856 288 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 CTNNA1P35221 906 aaKnown RBP8.89□□□□□ -0.99
SYNE2-220ENST00000555612 RECQLP46063 649 aaPredicted RBP8.89□□□□□ -0.99
SYNE2-220ENST00000555612 PDE1BQ01064 536 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 KRT76Q01546 638 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 PKP1Q13835 747 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 ARHGEF18Q6ZSZ5 1173 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 DEFB132Q7Z7B7 95 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 FAM133AQ8N9E0 248 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.89□□□□□ -0.99
SYNE2-220ENST00000555612 PSPC1Q8WXF1 523 aaKnown RBP8.89□□□□□ -0.99
SYNE2-220ENST00000555612 ARHGEF2Q92974 986 aaKnown RBP8.89□□□□□ -0.99
SYNE2-220ENST00000555612 FAM81BQ96LP2 452 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 MTRQ99707 1265 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 POLD4Q9HCU8 107 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 SPATA31A1Q5TZJ5 1347 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 ARL13BQ3SXY8 428 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 ZNF658Q5TYW1 1059 aaPredicted RBP8.89□□□□□ -0.99
SYNE2-220ENST00000555612 ANKRD20A3Q5VUR7 823 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 OR6J1Q8NGC5 347 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 CHAMP1Q96JM3 812 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 FAM84BQ96KN1 310 aaPredicted RBP8.89□□□□□ -0.99
SYNE2-220ENST00000555612 A0A1W2PQ27 194 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 A0A1W2PQ64 194 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 A0A1W2PQD8 194 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 POTEMA6NI47 508 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 CASP14P31944 242 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 PPFIA1Q13136 1202 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 SNAPC2Q13487 334 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 SNX1Q13596 522 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 MAN2A1Q16706 1144 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 PADI6Q6TGC4 694 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 SMAP1Q8IYB5 467 aaPredicted RBP8.89□□□□□ -0.99
SYNE2-220ENST00000555612 LINC00116Q8NCU8 138 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 MCPH1Q8NEM0 835 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 DYDC2Q96IM9 177 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 TMEM260Q9NX78 707 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 GMPSP49915 693 aaPredicted RBP8.89□□□□□ -0.99
SYNE2-220ENST00000555612 PTPN21Q16825 1174 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 EFCAB13Q8IY85 973 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 PARK7Q99497 189 aaKnown RBP8.89□□□□□ -0.99
SYNE2-220ENST00000555612 TTC1Q99614 292 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 MTIF3Q9H2K0 278 aaKnown RBP8.89□□□□□ -0.99
SYNE2-220ENST00000555612 POLR3EQ9NVU0 708 aa8.89□□□□□ -0.99
SYNE2-220ENST00000555612 NDUFAB1O14561 156 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms