RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 NRCAMQ92823 1304 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 NCOR2Q9Y618 2525 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 FSD2A1L4K1 749 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 SP100P23497 879 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-215ENST00000555259 MTMR3Q13615 1198 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 DUSP6Q16828 381 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 MCTP2Q6DN12 878 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 CYFIP1Q7L576 1253 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 RTN4RL1Q86UN2 441 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-215ENST00000555259 NPAS4Q8IUM7 802 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 UBALD2Q8IYN6 164 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 CDCA3Q99618 268 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-215ENST00000555259 S1PR5Q9H228 398 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 AGO3Q9H9G7 860 aaKnown RBP11.2□□□□□ -0.62
SCFD1-215ENST00000555259 HELLSQ9NRZ9 838 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 TELO2Q9Y4R8 837 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 ZMYM6O95789 1325 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 PLXNA4Q9HCM2 1894 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 PPP1R11O60927 126 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-215ENST00000555259 BRD1O95696 1058 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 UBE3AQ05086 875 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 NEDD9Q14511 834 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 GNPTABQ3T906 1256 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 UTP14CQ5TAP6 766 aaKnown RBP11.19□□□□□ -0.62
SCFD1-215ENST00000555259 TMEM184AQ6ZMB5 413 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 RSPH3Q86UC2 560 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 ESR2Q92731 530 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 KAT14Q9H8E8 782 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 SORCS3Q9UPU3 1222 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 CDY2AQ9Y6F7 541 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 NEDD4P46934 1319 aa11.19□□□□□ -0.62
SCFD1-215ENST00000555259 MED19A0JLT2 244 aaPredicted RBP11.18□□□□□ -0.62
SCFD1-215ENST00000555259 PARP1P09874 1014 aaKnown RBP11.18□□□□□ -0.62
SCFD1-215ENST00000555259 CD52P31358 61 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 GATMP50440 423 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 ERVFC1P60507 584 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 SEMA3FQ13275 785 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 KCNC3Q14003 757 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 ASTLQ6HA08 431 aaPredicted RBP11.18□□□□□ -0.62
SCFD1-215ENST00000555259 ANKRD54Q6NXT1 300 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 SYCE2Q6PIF2 218 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 SAMD3Q8N6K7 520 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 DNAJB3Q8WWF6 145 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 FAM227BQ96M60 508 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 INPP4AQ96PE3 977 aaPredicted RBP11.18□□□□□ -0.62
SCFD1-215ENST00000555259 FTHL17Q9BXU8 183 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 RNF41Q9H4P4 317 aaPredicted RBP11.18□□□□□ -0.62
SCFD1-215ENST00000555259 TSHZ2Q9NRE2 1034 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 PCDHA1Q9Y5I3 950 aa11.18□□□□□ -0.62
SCFD1-215ENST00000555259 KAT6AQ92794 2004 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 A0A0D9SFI3 127 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 TRIM6-TRIM34B2RNG4 842 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 SPATA31C2B4DYI2 1134 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 STAG3L1P0CL83 205 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 SRGAP2BP0DMP2 458 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 MX1P20591 662 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 TECP42680 631 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 MRPS9P82933 396 aaKnown RBP11.17□□□□□ -0.62
SCFD1-215ENST00000555259 SP4Q02446 784 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 PPFIA1Q13136 1202 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 MCMDC2Q4G0Z9 681 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 FCHSD1Q86WN1 690 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 IQCA1Q86XH1 822 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 APOL5Q9BWW9 433 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 SMOC2Q9H3U7 446 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 TUBE1Q9UJT0 475 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 NR2E1Q9Y466 385 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 PCDHB12Q9Y5F1 795 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 MYO10Q9HD67 2058 aa11.17□□□□□ -0.62
SCFD1-215ENST00000555259 DOCK5Q9H7D0 1870 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 MBLAC1A4D2B0 266 aaPredicted RBP11.16□□□□□ -0.62
SCFD1-215ENST00000555259 GCOM1H8Y6P7 765 aaPredicted RBP11.16□□□□□ -0.62
SCFD1-215ENST00000555259 FSCN2O14926 492 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 ZBTB5O15062 677 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 FIBPO43427 364 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 STAM2O75886 525 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 FGF18O76093 207 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 POLR2MP0CAP2 368 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 SCG2P13521 617 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 CLCN5P51795 746 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 MRPS6P82932 125 aaKnown RBP11.16□□□□□ -0.62
SCFD1-215ENST00000555259 CCDC178Q5BJE1 867 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 MARCH8Q5T0T0 291 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 PDE12Q6L8Q7 609 aaKnown RBP11.16□□□□□ -0.62
SCFD1-215ENST00000555259 ZNF589Q86UQ0 364 aaPredicted RBP11.16□□□□□ -0.62
SCFD1-215ENST00000555259 STAG2Q8N3U4 1231 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 ENAHQ8N8S7 591 aaPredicted RBP11.16□□□□□ -0.62
SCFD1-215ENST00000555259 RASGRP4Q8TDF6 673 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 EVI5LQ96CN4 794 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 RMDN1Q96DB5 314 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 MTMR8Q96EF0 704 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 CDH22Q9UJ99 828 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 TPRP12270 2363 aaKnown RBP11.16□□□□□ -0.62
SCFD1-215ENST00000555259 C2CD4DB7Z1M9 353 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 HOXB8P17481 243 aaPredicted RBP11.16□□□□□ -0.62
SCFD1-215ENST00000555259 GRIK4Q16099 956 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 SPOUT1Q5T280 376 aaKnown RBP11.16□□□□□ -0.62
SCFD1-215ENST00000555259 C20orf194Q5TEA3 1177 aa11.16□□□□□ -0.62
SCFD1-215ENST00000555259 ZSCAN10Q96SZ4 725 aaPredicted RBP11.16□□□□□ -0.62
SCFD1-215ENST00000555259 MFSD1Q9H3U5 465 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms