RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 YBX2Q9Y2T7 364 aaKnown RBP18.24■□□□□ 0.51
CCDC88C-209ENST00000554872 EYSQ5T1H1 3165 aa18.23■□□□□ 0.51
CCDC88C-209ENST00000554872 CCNE2O96020 404 aa18.23■□□□□ 0.51
CCDC88C-209ENST00000554872 NLRP5P59047 1200 aa18.23■□□□□ 0.51
CCDC88C-209ENST00000554872 WDR5P61964 334 aaKnown RBP18.23■□□□□ 0.51
CCDC88C-209ENST00000554872 GRIK4Q16099 956 aa18.23■□□□□ 0.51
CCDC88C-209ENST00000554872 PLEKHG4Q58EX7 1191 aa18.23■□□□□ 0.51
CCDC88C-209ENST00000554872 ZNF746Q6NUN9 644 aaPredicted RBP18.23■□□□□ 0.51
CCDC88C-209ENST00000554872 MOXD1Q6UVY6 613 aa18.23■□□□□ 0.51
CCDC88C-209ENST00000554872 ABHD15Q6UXT9 468 aa18.23■□□□□ 0.51
CCDC88C-209ENST00000554872 SMAP1Q8IYB5 467 aaPredicted RBP18.23■□□□□ 0.51
CCDC88C-209ENST00000554872 TUBE1Q9UJT0 475 aa18.23■□□□□ 0.51
CCDC88C-209ENST00000554872 CYP3A7-CYP3A51PA0A087WV96 503 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 EDIL3O43854 480 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 PPFIA3O75145 1194 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 CYP3A7P24462 503 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 STAT5BP51692 787 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 AK2P54819 239 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 KRT76Q01546 638 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 STK3Q13188 491 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 GRIN2CQ14957 1233 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 MARCH8Q5T0T0 291 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 HERC6Q8IVU3 1022 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 BLIDQ8IZY5 108 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 RASGRP4Q8TDF6 673 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 ZNF577Q9BSK1 485 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 SLC28A3Q9HAS3 691 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 TRANK1O15050 2925 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 KAT6AQ92794 2004 aa18.22■□□□□ 0.51
CCDC88C-209ENST00000554872 PTPRSQ13332 1948 aa18.21■□□□□ 0.51
CCDC88C-209ENST00000554872 KCNJ6P48051 423 aa18.21■□□□□ 0.51
CCDC88C-209ENST00000554872 IKBKEQ14164 716 aa18.21■□□□□ 0.51
CCDC88C-209ENST00000554872 PLCB4Q15147 1175 aa18.21■□□□□ 0.51
CCDC88C-209ENST00000554872 FAM160B1Q5W0V3 765 aa18.21■□□□□ 0.51
CCDC88C-209ENST00000554872 FAM43BQ6ZT52 329 aaPredicted RBP18.21■□□□□ 0.51
CCDC88C-209ENST00000554872 MBOAT7Q96N66 472 aa18.21■□□□□ 0.51
CCDC88C-209ENST00000554872 RIT2Q99578 217 aa18.21■□□□□ 0.51
CCDC88C-209ENST00000554872 LARP6Q9BRS8 491 aaKnown RBP18.21■□□□□ 0.51
CCDC88C-209ENST00000554872 PHF20Q9BVI0 1012 aa18.21■□□□□ 0.51
CCDC88C-209ENST00000554872 COL1A2P08123 1366 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 COL4A6Q14031 1691 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 INSRRP14616 1297 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 MARK3P27448 753 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 MGAT3Q09327 533 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 TCTN1Q2MV58 587 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 Q4G0T1 1027 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 PRR16Q569H4 304 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 MIS18BP1Q6P0N0 1132 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 RSPH3Q86UC2 560 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 MYLIPQ8WY64 445 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 APBB2Q92870 758 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 GTF3C6Q969F1 213 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 NKX2-4Q9H2Z4 354 aa18.2■□□□□ 0.5
CCDC88C-209ENST00000554872 KIF28PB7ZC32 967 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 CTDNEP1O95476 244 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 SEC24BO95487 1268 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 FOSL2P15408 326 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 XBP1P17861 261 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 RABGGTBP53611 331 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 RUFY4Q6ZNE9 571 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 MICAL3Q7RTP6 2002 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 KRT25Q7Z3Z0 450 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 CCDC60Q8IWA6 550 aaPredicted RBP18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 DBF4BQ8NFT6 615 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 TBCKQ8TEA7 893 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 ATP8B4Q8TF62 1192 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 WASF1Q92558 559 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 TCEAL9Q9UHQ7 104 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 PCDHA2Q9Y5H9 948 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 MAFBQ9Y5Q3 323 aaPredicted RBP18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 SQORQ9Y6N5 450 aa18.19■□□□□ 0.5
CCDC88C-209ENST00000554872 UNC80Q8N2C7 3258 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 A0A0C4DFX4 3053 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 POTEB3A0JP26 581 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 HBP1O60381 514 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 GJB5O95377 273 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 CHRNA1P02708 482 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 C8orf34Q49A92 452 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 PPP2R2DQ66LE6 453 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 POTEBQ6S5H4 581 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 RDM1Q8NG50 284 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 MAFAQ8NHW3 353 aaPredicted RBP18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 SEPT8Q92599 483 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 SLC5A5Q92911 643 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 AIFM3Q96NN9 605 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 ZNF302Q9NR11 478 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 TRPC6Q9Y210 931 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 PCDHA10Q9Y5I2 948 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 SIP14410 1827 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 IGSF9BQ9UPX0 1349 aa18.18■□□□□ 0.5
CCDC88C-209ENST00000554872 PRUNE2Q8WUY3 3088 aa18.17■□□□□ 0.5
CCDC88C-209ENST00000554872 SMIM35A0A1B0GVV1 85 aa18.17■□□□□ 0.5
CCDC88C-209ENST00000554872 WDR64B1ANS9 1081 aa18.17■□□□□ 0.5
CCDC88C-209ENST00000554872 MSH4O15457 936 aa18.17■□□□□ 0.5
CCDC88C-209ENST00000554872 CA3P07451 260 aa18.17■□□□□ 0.5
CCDC88C-209ENST00000554872 CTSHP09668 335 aa18.17■□□□□ 0.5
CCDC88C-209ENST00000554872 NEK4P51957 841 aa18.17■□□□□ 0.5
CCDC88C-209ENST00000554872 DEFB103AP81534 67 aa18.17■□□□□ 0.5
CCDC88C-209ENST00000554872 NONOQ15233 471 aaKnown RBP eCLIP18.17■□□□□ 0.5
CCDC88C-209ENST00000554872 ME3Q16798 604 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms