RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 HFE2Q6ZVN8 426 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 MTMR8Q96EF0 704 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 RBSNQ9H1K0 784 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 ZSWIM6Q9HCJ5 1215 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 CCDC39Q9UFE4 941 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 PRKAG3Q9UGI9 489 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 MUTYHQ9UIF7 546 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 FAM50BQ9Y247 325 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 DOCK5Q9H7D0 1870 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 ADGRA3Q8IWK6 1321 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 C19orf67A6NJJ6 358 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 GRM6O15303 877 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 CAND2O75155 1236 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 TBX10O75333 385 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 TGFB3P10600 412 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 GHRP10912 638 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 MSNP26038 577 aaKnown RBP13.06□□□□□ -0.32
VPS33B-204ENST00000554660 GTF2F1P35269 517 aaKnown RBP eCLIP13.06□□□□□ -0.32
VPS33B-204ENST00000554660 NT5C2P49902 561 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 UBE2HP62256 183 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 ARHGAP4P98171 946 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 SP4Q02446 784 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 HYAL1Q12794 435 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 SEMA3FQ13275 785 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 ANKRD1Q15327 319 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 IMMTQ16891 758 aaKnown RBP13.06□□□□□ -0.32
VPS33B-204ENST00000554660 FIBCD1Q8N539 461 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 LMBR1Q8WVP7 490 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 TSPY26PQ9H489 355 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 MAD2L2Q9UI95 211 aa13.06□□□□□ -0.32
VPS33B-204ENST00000554660 GCOM1H8Y6P7 765 aaPredicted RBP13.05□□□□□ -0.32
VPS33B-204ENST00000554660 LINC01565O15544 149 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 OFD1O75665 1012 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 POLR2MP0CAP2 368 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 AK2P54819 239 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 MRPS9P82933 396 aaKnown RBP13.05□□□□□ -0.32
VPS33B-204ENST00000554660 NECTIN1Q15223 517 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 SEC23AQ15436 765 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 CCDC183Q5T5S1 534 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 UTP14CQ5TAP6 766 aaKnown RBP13.05□□□□□ -0.32
VPS33B-204ENST00000554660 RNF20Q5VTR2 975 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 CYFIP1Q7L576 1253 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 APBB2Q92870 758 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 PIGSQ96S52 555 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 GPR20Q99678 358 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 C11orf84Q9BUA3 381 aaPredicted RBP13.05□□□□□ -0.32
VPS33B-204ENST00000554660 UPF3BQ9BZI7 483 aaKnown RBP13.05□□□□□ -0.32
VPS33B-204ENST00000554660 IL25Q9H293 177 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 RC3H2Q9HBD1 1191 aaKnown RBP13.05□□□□□ -0.32
VPS33B-204ENST00000554660 MAP3K20Q9NYL2 800 aaKnown RBP13.05□□□□□ -0.32
VPS33B-204ENST00000554660 CYP46A1Q9Y6A2 500 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 TRIOO75962 3097 aa13.05□□□□□ -0.32
VPS33B-204ENST00000554660 C5orf67F2Z3F1 127 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 MBTPS2O43462 519 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 STX6O43752 255 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 PDCP20941 246 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 ADAM17P78536 824 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 SMAD2Q15796 467 aaKnown RBP13.04□□□□□ -0.32
VPS33B-204ENST00000554660 CTC1Q2NKJ3 1217 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 GNPTABQ3T906 1256 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 METTL7BQ6UX53 244 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 RUFY4Q6ZNE9 571 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 RUFY3Q7L099 469 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 CYB5R4Q7L1T6 521 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 MAP4K1Q92918 833 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 INPP4AQ96PE3 977 aaPredicted RBP13.04□□□□□ -0.32
VPS33B-204ENST00000554660 DSCC1Q9BVC3 393 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 KRT23Q9C075 422 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 CNNM2Q9H8M5 875 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 RTEL1Q9NZ71 1219 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 ZNF215Q9UL58 517 aaPredicted RBP13.04□□□□□ -0.32
VPS33B-204ENST00000554660 SMC3Q9UQE7 1217 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 FRMPD4Q14CM0 1322 aa13.04□□□□□ -0.32
VPS33B-204ENST00000554660 ZNF318Q5VUA4 2279 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 PALM3A6NDB9 673 aaPredicted RBP13.03□□□□□ -0.32
VPS33B-204ENST00000554660 SPATA31C2B4DYI2 1134 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 FIBPO43427 364 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 CYTH3O43739 400 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 F13A1P00488 732 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 CHRNA1P02708 482 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 GNAT1P11488 350 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 BMPR1AP36894 532 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 SMAD4Q13485 552 aaKnown RBP13.03□□□□□ -0.32
VPS33B-204ENST00000554660 NEDD9Q14511 834 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 KRT32Q14532 448 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 FAM26DQ5JW98 314 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 PIBF1Q8WXW3 757 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 PHOX2BQ99453 314 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 POP1Q99575 1024 aaKnown RBP13.03□□□□□ -0.32
VPS33B-204ENST00000554660 IGFLR1Q9H665 355 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 ALG13Q9NP73 1137 aaKnown RBP13.03□□□□□ -0.32
VPS33B-204ENST00000554660 ZKSCAN5Q9Y2L8 839 aa13.03□□□□□ -0.32
VPS33B-204ENST00000554660 KIAA1671Q9BY89 1806 aa13.02□□□□□ -0.32
VPS33B-204ENST00000554660 SYCE3A1L190 88 aa13.02□□□□□ -0.33
VPS33B-204ENST00000554660 NCK2O43639 380 aa13.02□□□□□ -0.33
VPS33B-204ENST00000554660 MMP1P03956 469 aa13.02□□□□□ -0.33
VPS33B-204ENST00000554660 MARK3P27448 753 aa13.02□□□□□ -0.33
VPS33B-204ENST00000554660 ICAM3P32942 547 aa13.02□□□□□ -0.33
VPS33B-204ENST00000554660 MGAT3Q09327 533 aa13.02□□□□□ -0.33
VPS33B-204ENST00000554660 BTG3Q14201 252 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms