RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 GNAT1P11488 350 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 FDPSP14324 419 aaKnown RBP11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 MARK3P27448 753 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 THPOP40225 353 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 USP11P51784 963 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 MARCH8Q5T0T0 291 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 GALNT17Q6IS24 598 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 ABHD15Q6UXT9 468 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 PLPPR4Q7Z2D5 763 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 BLIDQ8IZY5 108 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 GLG1Q92896 1179 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 GTF3C6Q969F1 213 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 UIMC1Q96RL1 719 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 KIF2CQ99661 725 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 ZNF577Q9BSK1 485 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 COL25A1Q9BXS0 654 aaPredicted RBP11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 FTOQ9C0B1 505 aaKnown RBP eCLIP11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 GJB4Q9NTQ9 266 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 KCNJ14Q9UNX9 436 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 SLC4A7Q9Y6M7 1214 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 MBLAC1A4D2B0 266 aaPredicted RBP11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 ZBBXA8MT70 800 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 RSPH10B2B2RC85 870 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 DDX39AO00148 427 aaKnown RBP11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 RSPH10BP0C881 870 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 ACTN1P12814 892 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 STAT5BP51692 787 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 SETQ01105 290 aaPredicted RBP11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 ST3GAL1Q11201 340 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 PPFIA1Q13136 1202 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 PLCB4Q15147 1175 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 GRIK4Q16099 956 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 PRR16Q569H4 304 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 RUFY4Q6ZNE9 571 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 RPAINQ86UA6 219 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 TBCKQ8TEA7 893 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 TIFAQ96CG3 184 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 CDX2Q99626 313 aaPredicted RBP11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 PHF20Q9BVI0 1012 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 OSBPL7Q9BZF2 842 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 AZI2Q9H6S1 392 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 TBC1D22BQ9NU19 505 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 ORC3Q9UBD5 711 aaPredicted RBP11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 STXBP5LQ9Y2K9 1186 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 YBX2Q9Y2T7 364 aaKnown RBP11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 TTC28Q96AY4 2481 aa11.67□□□□□ -0.54
CCDC88C-206ENST00000553437 CDH23Q9H251 3354 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 CHD7Q9P2D1 2997 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 CYP3A7-CYP3A51PA0A087WV96 503 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 MSH4O15457 936 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 CAND2O75155 1236 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 BAIAP3O94812 1187 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 INSRRP14616 1297 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 ATP2A2P16615 1042 aaKnown RBP11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 CYP3A7P24462 503 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 RABGGTBP53611 331 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 MKRN4PQ13434 485 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 FAM26DQ5JW98 314 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 CNKSR3Q6P9H4 555 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 POTEGQ6S5H5 508 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 NSUN7Q8NE18 718 aaKnown RBP11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 PHOSPHO2Q8TCD6 241 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 MBOAT7Q96N66 472 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 C22orf23Q9BZE7 217 aa11.66□□□□□ -0.54
CCDC88C-206ENST00000553437 RRN3P2A6NIE6 340 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 JAK2O60674 1132 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 TDP2O95551 362 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 CHRNA1P02708 482 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 MYOGP15173 224 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 ATP4AP20648 1035 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 WDR5P61964 334 aaKnown RBP11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 GRIN2CQ14957 1233 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 RAB30Q15771 203 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 Q4G0T1 1027 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 ZNF746Q6NUN9 644 aaPredicted RBP11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 TAF2Q6P1X5 1199 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 KRT25Q7Z3Z0 450 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 CCDC60Q8IWA6 550 aaPredicted RBP11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 DBF4BQ8NFT6 615 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 OXER1Q8TDS5 423 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 SLC5A5Q92911 643 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 ZBTB10Q96DT7 871 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 SLC9A7Q96T83 725 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 ZNF576Q9H609 170 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 MSRAQ9UJ68 235 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 TUBE1Q9UJT0 475 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 PCDHA11Q9Y5I1 949 aa11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 MAFBQ9Y5Q3 323 aaPredicted RBP11.65□□□□□ -0.54
CCDC88C-206ENST00000553437 ABHD14A-ACY1A0A1B0GW23 586 aa11.64□□□□□ -0.55
CCDC88C-206ENST00000553437 POTEB3A0JP26 581 aa11.64□□□□□ -0.55
CCDC88C-206ENST00000553437 CTSHP09668 335 aa11.64□□□□□ -0.55
CCDC88C-206ENST00000553437 RBM25P49756 843 aaKnown RBP11.64□□□□□ -0.55
CCDC88C-206ENST00000553437 SLC26A2P50443 739 aa11.64□□□□□ -0.55
CCDC88C-206ENST00000553437 IGBP1P78318 339 aa11.64□□□□□ -0.55
CCDC88C-206ENST00000553437 KRT76Q01546 638 aa11.64□□□□□ -0.55
CCDC88C-206ENST00000553437 MGAT3Q09327 533 aa11.64□□□□□ -0.55
CCDC88C-206ENST00000553437 NONOQ15233 471 aaKnown RBP eCLIP11.64□□□□□ -0.55
CCDC88C-206ENST00000553437 INF2Q27J81 1249 aa11.64□□□□□ -0.55
CCDC88C-206ENST00000553437 PLEKHG4Q58EX7 1191 aa11.64□□□□□ -0.55
CCDC88C-206ENST00000553437 EARS2Q5JPH6 523 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms