RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 KCTD10Q9H3F6 313 aa29.17■■■□□ 2.26
CCDC88C-205ENST00000553403 TBC1D22BQ9NU19 505 aa29.17■■■□□ 2.26
CCDC88C-205ENST00000553403 ABHD10Q9NUJ1 306 aa29.17■■■□□ 2.26
CCDC88C-205ENST00000553403 PPP2R2CQ9Y2T4 447 aa29.17■■■□□ 2.26
CCDC88C-205ENST00000553403 GOLGA6L9A6NEM1 432 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 PPP1R12BO60237 982 aaPredicted RBP29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 TBCAO75347 108 aaKnown RBP29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 MTMR1Q13613 665 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 BAATQ14032 418 aaPredicted RBP29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 VWA3BQ502W6 1294 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 FKBP15Q5T1M5 1219 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 ARHGEF16Q5VV41 709 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 C1orf186Q6ZWK4 172 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 EPM2AIP1Q7L775 607 aaPredicted RBP29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 MIER3Q7Z3K6 550 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 SFR1Q86XK3 245 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 REXO1L1PQ8IX06 675 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 ZC3H3Q8IXZ2 948 aaKnown RBP29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 IQCDQ96DY2 449 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 EEF2KMTQ96G04 330 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 TEX13BQ9BXU2 312 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 COL11A1P12107 1806 aaPredicted RBP29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 WDR90Q96KV7 1748 aa29.16■■■□□ 2.26
CCDC88C-205ENST00000553403 PAPPA2Q9BXP8 1791 aa29.15■■■□□ 2.26
CCDC88C-205ENST00000553403 GNA14O95837 355 aa29.15■■■□□ 2.26
CCDC88C-205ENST00000553403 TMEM132BQ14DG7 1078 aa29.15■■■□□ 2.26
CCDC88C-205ENST00000553403 TMTC1Q8IUR5 882 aa29.15■■■□□ 2.26
CCDC88C-205ENST00000553403 PIGOQ8TEQ8 1089 aa29.15■■■□□ 2.26
CCDC88C-205ENST00000553403 CAPN11Q9UMQ6 739 aa29.15■■■□□ 2.26
CCDC88C-205ENST00000553403 CSADQ9Y600 493 aa29.15■■■□□ 2.26
CCDC88C-205ENST00000553403 EDRF1Q3B7T1 1238 aa29.15■■■□□ 2.26
CCDC88C-205ENST00000553403 ADM5C9JUS6 153 aa29.14■■■□□ 2.26
CCDC88C-205ENST00000553403 TRAF5O00463 557 aa29.14■■■□□ 2.26
CCDC88C-205ENST00000553403 P4HBP07237 508 aaKnown RBP29.14■■■□□ 2.26
CCDC88C-205ENST00000553403 CCND2P30279 289 aa29.14■■■□□ 2.26
CCDC88C-205ENST00000553403 KRT9P35527 623 aa29.14■■■□□ 2.26
CCDC88C-205ENST00000553403 ITGB3BPQ13352 177 aaPredicted RBP29.14■■■□□ 2.26
CCDC88C-205ENST00000553403 BMT2Q1RMZ1 405 aa29.14■■■□□ 2.26
CCDC88C-205ENST00000553403 LXNQ9BS40 222 aa29.14■■■□□ 2.26
CCDC88C-205ENST00000553403 OLFML3Q9NRN5 406 aa29.14■■■□□ 2.26
CCDC88C-205ENST00000553403 SPDYE16A6NNV3 312 aaPredicted RBP29.13■■■□□ 2.25
CCDC88C-205ENST00000553403 MYCLP12524 364 aaPredicted RBP29.13■■■□□ 2.25
CCDC88C-205ENST00000553403 GTF2F1P35269 517 aaKnown RBP eCLIP29.13■■■□□ 2.25
CCDC88C-205ENST00000553403 IREB2P48200 963 aaKnown RBP29.13■■■□□ 2.25
CCDC88C-205ENST00000553403 FIGNQ5HY92 759 aa29.13■■■□□ 2.25
CCDC88C-205ENST00000553403 NELFCDQ8IXH7 590 aa29.13■■■□□ 2.25
CCDC88C-205ENST00000553403 L3MBTL3Q96JM7 780 aaPredicted RBP29.13■■■□□ 2.25
CCDC88C-205ENST00000553403 NDST4Q9H3R1 872 aa29.13■■■□□ 2.25
CCDC88C-205ENST00000553403 LUC7L2Q9Y383 392 aaKnown RBP29.13■■■□□ 2.25
CCDC88C-205ENST00000553403 LOXHD1Q8IVV2 1947 aa29.13■■■□□ 2.25
CCDC88C-205ENST00000553403 TTC26A0AVF1 554 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 RNF225M0QZC1 329 aaPredicted RBP29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 SYCP1Q15431 976 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 TOGARAM2Q6ZUX3 1019 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 USP50Q70EL3 339 aaPredicted RBP29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 KIF18AQ8NI77 898 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 ACAD9Q9H845 621 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 WRAP73Q9P2S5 460 aaPredicted RBP29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 SEL1LQ9UBV2 794 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 SOWAHDA6NJG2 315 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 DDX39AO00148 427 aaKnown RBP29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 FAM13AO94988 1023 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 MARSP56192 900 aaKnown RBP29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 KNOP1Q1ED39 458 aaKnown RBP29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 CYP26C1Q6V0L0 522 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 VSIG10LQ86VR7 867 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 OR8K1Q8NGG5 319 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 TTYH3Q9C0H2 523 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 ZSWIM4Q9H7M6 989 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 ODF2LQ9ULJ1 636 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 TRAF3IP3Q9Y228 551 aa29.12■■■□□ 2.25
CCDC88C-205ENST00000553403 RSPH10B2B2RC85 870 aa29.11■■■□□ 2.25
CCDC88C-205ENST00000553403 RIOK3O14730 519 aaKnown RBP29.11■■■□□ 2.25
CCDC88C-205ENST00000553403 LYPLA2O95372 231 aa29.11■■■□□ 2.25
CCDC88C-205ENST00000553403 RSPH10BP0C881 870 aa29.11■■■□□ 2.25
CCDC88C-205ENST00000553403 RAD9BQ6WBX8 426 aa29.11■■■□□ 2.25
CCDC88C-205ENST00000553403 GPRASP2Q96D09 838 aa29.11■■■□□ 2.25
CCDC88C-205ENST00000553403 DNAJC7Q99615 494 aa29.11■■■□□ 2.25
CCDC88C-205ENST00000553403 PKD2L1Q9P0L9 805 aa29.11■■■□□ 2.25
CCDC88C-205ENST00000553403 MAFGO15525 162 aa29.1■■■□□ 2.25
CCDC88C-205ENST00000553403 CASP5P51878 434 aa29.1■■■□□ 2.25
CCDC88C-205ENST00000553403 FSTL1Q12841 308 aa29.1■■■□□ 2.25
CCDC88C-205ENST00000553403 BANK1Q8NDB2 785 aa29.1■■■□□ 2.25
CCDC88C-205ENST00000553403 NSUN6Q8TEA1 469 aaKnown RBP29.1■■■□□ 2.25
CCDC88C-205ENST00000553403 ZC3H15Q8WU90 426 aaKnown RBP29.1■■■□□ 2.25
CCDC88C-205ENST00000553403 ZNF592Q92610 1267 aa29.1■■■□□ 2.25
CCDC88C-205ENST00000553403 A0A1W2PQJ5 194 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 PDXKO00764 312 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 EIF3DO15371 548 aaKnown RBP eCLIP29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 NR3C2P08235 984 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 CCDC175P0C221 793 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 GUCY2CP25092 1073 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 ZNF131P52739 623 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 NLRX1Q86UT6 975 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 MRPL44Q9H9J2 332 aaKnown RBP29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 DBR1Q9UK59 544 aaKnown RBP29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 OTOFQ9HC10 1997 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 ARHGEF35A5YM69 484 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 RASSF10A6NK89 507 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 DYNC1I1O14576 645 aa29.09■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms