RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	ANKRD20A2	Q5SQ80	823 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	ANKRD20A1	Q5TYW2	823 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	SUSD4	Q5VX71	490 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	AP5M1	Q9H0R1	490 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	ABCC3	O15438	1527 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	USP17L3	A6NCW0	530 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	USP17L4	A6NCW7	530 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	SPDYE16	A6NNV3	312 aa	Predicted RBP	12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	NR1D1	P20393	614 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	TMED2	Q15363	201 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	SPDYE2	Q495Y8	402 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	RAPH1	Q70E73	1250 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	USP17L1	Q7RTZ2	530 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	FAM149B1	Q96BN6	582 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	ZMYND12	Q9H0C1	365 aa		12.45	□□□□□ -0.42
SYNE2-208	ENST00000553289	SYNGAP1	Q96PV0	1343 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	FAM170A	A1A519	330 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	PRPSAP2	O60256	369 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	TFAM	Q00059	246 aa	Known RBP	12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	TRIM68	Q6AZZ1	485 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	DARS2	Q6PI48	645 aa	Known RBP	12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	ABL1	P00519	1130 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	DDIT3	P35638	169 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	IFRD2	Q12894	506 aa	Predicted RBP	12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	KCTD6	Q8NC69	237 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	AIFM3	Q96NN9	605 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	PLEKHA8P1	O95397	391 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	CDC25A	P30304	524 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	COG7	P83436	770 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	SNX1	Q13596	522 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	UBE2S	Q16763	222 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	SLFNL1	Q499Z3	407 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	CYP4F22	Q6NT55	531 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	CENPU	Q71F23	418 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	ARMCX2	Q7L311	632 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	SRRM1	Q8IYB3	904 aa	Known RBP	12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	FBXO41	Q8TF61	875 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	TTC1	Q99614	292 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	OSBPL5	Q9H0X9	879 aa	Predicted RBP	12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	GOLGA8S	H3BPF8	625 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	ATP1A3	P13637	1013 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	TCP11	Q8WWU5	503 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	EFHD1	Q9BUP0	239 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	DBNDD1	Q9H9R9	158 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	TLK1	Q9UKI8	766 aa		12.44	□□□□□ -0.42
SYNE2-208	ENST00000553289	IQANK1	A0A1B0GTG1	560 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	EXOC1L	A0A1B0GW35	172 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	ZBTB5	O15062	677 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	KRT39	Q6A163	491 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	CLEC17A	Q6ZS10	378 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	RSRC2	Q7L4I2	434 aa	Known RBP	12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	PDIK1L	Q8N165	341 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	KLHL29	Q96CT2	875 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	FAM20A	Q96MK3	541 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	PALLD	Q8WX93	1383 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	LRRD1	A4D1F6	860 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	TTC36	A6NLP5	189 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	MGEA5	O60502	916 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	SETSIP	P0DME0	302 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	SAT1	P21673	171 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	CXCR5	P32302	372 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	ARHGEF6	Q15052	776 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	RTKN2	Q8IZC4	609 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	PPP1R9A	Q9ULJ8	1098 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	ARAP3	Q8WWN8	1544 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	ZMYND10	O75800	440 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	BASP1	P80723	227 aa	Known RBP	12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	MB21D2	Q8IYB1	491 aa	Predicted RBP	12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	TAB3	Q8N5C8	712 aa	Predicted RBP	12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	BHMT2	Q9H2M3	363 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	LRRC4	Q9HBW1	653 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	ABHD10	Q9NUJ1	306 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	IGKV5-2	P06315	115 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	ASNS	P08243	561 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	KRT10	P13645	584 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	STMN1	P16949	149 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	CAV1	Q03135	178 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	DIXDC1	Q155Q3	683 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	MTERF2	Q49AM1	385 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	FMR1NB	Q8N0W7	255 aa	Predicted RBP	12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	MCPH1	Q8NEM0	835 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	12.43	□□□□□ -0.42	3e-8	■■■■■ 70.6
SYNE2-208	ENST00000553289	NBPF3	Q9H094	633 aa		12.43	□□□□□ -0.42
SYNE2-208	ENST00000553289	MYO3B	Q8WXR4	1341 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	SYNJ2BP-COX16	A0A087WUM0	186 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	CYP2D7	A0A087X1C5	515 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	GCK	P35557	465 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	CYP27A1	Q02318	531 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	SCYL3	Q8IZE3	742 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	DNAAF3	Q8N9W5	541 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	CCNY	Q8ND76	341 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	RPF1	Q9H9Y2	349 aa	Known RBP	12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	COX16	Q9P0S2	106 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	RPS6KA4	O75676	772 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	TJP3	O95049	919 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	TBC1D9B	Q66K14	1250 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	ATG16L1	Q676U5	607 aa		12.42	□□□□□ -0.42
SYNE2-208	ENST00000553289	TTC19	Q6DKK2	380 aa	Predicted RBP	12.42	□□□□□ -0.42

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