RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SLC18A3Q16572 532 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 CDC42EP5Q6NZY7 148 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 TBC1D22AQ8WUA7 517 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 SH3GL2Q99962 352 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 ANO3Q9BYT9 981 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 GANQ9H2C0 597 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 KCNQ5Q9NR82 932 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 PCDHA1Q9Y5I3 950 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 QSER1Q2KHR3 1735 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 LTBP4Q8N2S1 1624 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 GRIN2DO15399 1336 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 THSD7AQ9UPZ6 1657 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 SHOX2O60902 331 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-213ENST00000552720 NR2F2P24468 414 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 POLD1P28340 1107 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 CCT5P48643 541 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 SLC12A3P55017 1021 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 PTK2Q05397 1052 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 KCNA1Q09470 495 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 CFAP221Q4G0U5 840 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 HYIQ5T013 277 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 MEI1Q5TIA1 1274 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 DPY19L2P1Q6NXN4 242 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 CATSPER3Q86XQ3 398 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 KLHL7Q8IXQ5 586 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 CCDC65Q8IXS2 484 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 RNF10Q8N5U6 811 aaKnown RBP8.24□□□□□ -1.09
LIMA1-213ENST00000552720 CASKIN2Q8WXE0 1202 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 INPP4AQ96PE3 977 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-213ENST00000552720 EDEM3Q9BZQ6 932 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 LRRC27Q9C0I9 530 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 NT5C3AQ9H0P0 336 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 BMP2KQ9NSY1 1161 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-213ENST00000552720 MEIS2O14770 477 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 MYBP10242 640 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 EPS15P42566 896 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 ATP1A2P50993 1020 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 GNGT1P63211 74 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 CYP4A11Q02928 519 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 SPIRE1Q08AE8 756 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 ASIC2Q16515 512 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 CDC37Q16543 378 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-213ENST00000552720 USH1GQ495M9 461 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 PRR16Q569H4 304 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 PPP1R18Q6NYC8 613 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 GJB7Q6PEY0 223 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 ZNF571Q7Z3V5 609 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-213ENST00000552720 SFR1Q86XK3 245 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 CYP2W1Q8TAV3 490 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 CEP63Q96MT8 703 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 CCDC43Q96MW1 224 aaKnown RBP8.24□□□□□ -1.09
LIMA1-213ENST00000552720 REEP2Q9BRK0 252 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 DHX36Q9H2U1 1008 aaKnown RBP8.24□□□□□ -1.09
LIMA1-213ENST00000552720 SLC24A3Q9HC58 644 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 KCNMB3Q9NPA1 279 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 HDAC9Q9UKV0 1011 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 NRXN2Q9P2S2 1712 aa8.24□□□□□ -1.09
LIMA1-213ENST00000552720 SCN9AQ15858 1988 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 KDM3AQ9Y4C1 1321 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 SFI1A8K8P3 1242 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 BBOX1O75936 387 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 EEF2P13639 858 aaKnown RBP8.23□□□□□ -1.09
LIMA1-213ENST00000552720 CASP4P49662 377 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 MARSP56192 900 aaKnown RBP8.23□□□□□ -1.09
LIMA1-213ENST00000552720 PDCLQ13371 301 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 GIT2Q14161 759 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 DCAF17Q5H9S7 520 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-213ENST00000552720 EMBQ6PCB8 327 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 IRF2BP2Q7Z5L9 587 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 RBM46Q8TBY0 533 aaKnown RBP8.23□□□□□ -1.09
LIMA1-213ENST00000552720 SYN2Q92777 582 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-213ENST00000552720 CAVIN3Q969G5 261 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 CAPS2Q9BXY5 557 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 GDF3Q9NR23 364 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 USP21Q9UK80 565 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 PCDHGC5Q9Y5F6 944 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 DDTLA6NHG4 134 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-213ENST00000552720 ZNF233A6NK53 670 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 FAM86B1E9PN63 330 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 KCNK3O14649 394 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 PPEF1O14829 653 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-213ENST00000552720 CLIC2O15247 247 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 RAD51CO43502 376 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 AKAP3O75969 853 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 FAM86B2P0C5J1 330 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 SPATA31C1P0DKV0 1188 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 GCFC2P16383 781 aaKnown RBP8.23□□□□□ -1.09
LIMA1-213ENST00000552720 CORO7P57737 925 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 SLC20A2Q08357 652 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 PPFIA1Q13136 1202 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 SEPT2Q15019 361 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 GPATCH4Q5T3I0 446 aaKnown RBP8.23□□□□□ -1.09
LIMA1-213ENST00000552720 APOBEC3HQ6NTF7 200 aaKnown RBP8.23□□□□□ -1.09
LIMA1-213ENST00000552720 PACS2Q86VP3 889 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 DDX42Q86XP3 938 aaKnown RBP eCLIP8.23□□□□□ -1.09
LIMA1-213ENST00000552720 BCAS4Q8TDM0 211 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 PIK3R5Q8WYR1 880 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 AIPL1Q9NZN9 384 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 SAMM50Q9Y512 469 aa8.23□□□□□ -1.09
LIMA1-213ENST00000552720 FRMD3A2A2Y4 597 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms