RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TAF12Q16514 161 aa17.72■□□□□ 0.43
CUX1-213ENST00000549414 IPO4Q8TEX9 1081 aaKnown RBP17.72■□□□□ 0.43
CUX1-213ENST00000549414 ZNF653Q96CK0 615 aa17.72■□□□□ 0.43
CUX1-213ENST00000549414 ZCCHC17Q9NP64 241 aaKnown RBP17.72■□□□□ 0.43
CUX1-213ENST00000549414 FAM217BQ9NTX9 383 aaPredicted RBP17.72■□□□□ 0.43
CUX1-213ENST00000549414 NKIRAS1Q9NYS0 192 aa17.72■□□□□ 0.43
CUX1-213ENST00000549414 TRIM10Q9UDY6 481 aa17.72■□□□□ 0.43
CUX1-213ENST00000549414 MAD2L2Q9UI95 211 aa17.72■□□□□ 0.43
CUX1-213ENST00000549414 LMNB1P20700 586 aa17.72■□□□□ 0.43
CUX1-213ENST00000549414 TMOD1P28289 359 aa17.72■□□□□ 0.43
CUX1-213ENST00000549414 RBM43Q6ZSC3 357 aaKnown RBP17.72■□□□□ 0.43
CUX1-213ENST00000549414 CD44P16070 742 aaKnown RBP17.71■□□□□ 0.43
CUX1-213ENST00000549414 DENND2CQ68D51 928 aa17.71■□□□□ 0.43
CUX1-213ENST00000549414 PTF1AQ7RTS3 328 aa17.71■□□□□ 0.43
CUX1-213ENST00000549414 DEFB132Q7Z7B7 95 aa17.71■□□□□ 0.43
CUX1-213ENST00000549414 HPSEQ9Y251 543 aa17.71■□□□□ 0.43
CUX1-213ENST00000549414 CASP8Q14790 479 aa17.71■□□□□ 0.43
CUX1-213ENST00000549414 MAGOHBQ96A72 148 aaKnown RBP17.71■□□□□ 0.43
CUX1-213ENST00000549414 GAS8O95995 478 aa17.71■□□□□ 0.43
CUX1-213ENST00000549414 GYS1P13807 737 aa17.71■□□□□ 0.43
CUX1-213ENST00000549414 PIK3CAP42336 1068 aa17.71■□□□□ 0.43
CUX1-213ENST00000549414 KAZNQ674X7 775 aa17.71■□□□□ 0.43
CUX1-213ENST00000549414 RNF207Q6ZRF8 634 aa17.71■□□□□ 0.43
CUX1-213ENST00000549414 JMJD4Q9H9V9 463 aa17.71■□□□□ 0.43
CUX1-213ENST00000549414 GCLMP48507 274 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 KCNB1Q14721 858 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 SLC10A5Q5PT55 438 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 ZBTB8OSQ8IWT0 167 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 PLCD3Q8N3E9 789 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 PPP1R16BQ96T49 567 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 TFR2Q9UP52 801 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 INO80B-WBP1J3KQ70 363 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 PALMO75781 387 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 TRIM49P0CI25 452 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 TRIM49CP0CI26 452 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 NSFP46459 744 aaKnown RBP17.7■□□□□ 0.42
CUX1-213ENST00000549414 OSTNP61366 133 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 FAM20AQ96MK3 541 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 INO80BQ9C086 356 aaPredicted RBP17.7■□□□□ 0.42
CUX1-213ENST00000549414 PACSIN2Q9UNF0 486 aaPredicted RBP17.7■□□□□ 0.42
CUX1-213ENST00000549414 FAM205AQ6ZU69 1335 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 MTMR1Q13613 665 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 PKN1Q16512 942 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 SUPT20HL1Q3ZLR7 823 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 PADI6Q6TGC4 694 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 ZMYND12Q9H0C1 365 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 LIMA1Q9UHB6 759 aaKnown RBP17.7■□□□□ 0.42
CUX1-213ENST00000549414 RNF40O75150 1001 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 TMEM191BP0C7N4 346 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 PPP1R18Q6NYC8 613 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 NFRKBQ6P4R8 1299 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 BCAS4Q8TDM0 211 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 PODXL2Q9NZ53 605 aa17.7■□□□□ 0.42
CUX1-213ENST00000549414 IPO5O00410 1097 aaKnown RBP17.69■□□□□ 0.42
CUX1-213ENST00000549414 KLK7P49862 253 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 MFAP3P55082 362 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 DPP9Q86TI2 863 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 ANKRD42Q8N9B4 389 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 GIMAP7Q8NHV1 300 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 DNAJC12Q9UKB3 198 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 ZHX2Q9Y6X8 837 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 USP14P54578 494 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 PTK2Q05397 1052 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 KNOP1Q1ED39 458 aaKnown RBP17.69■□□□□ 0.42
CUX1-213ENST00000549414 PDXDC2PQ6P474 469 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 CEP57Q86XR8 500 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 FAM71BQ8TC56 605 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 MMS19Q96T76 1030 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 EIF2AK1Q9BQI3 630 aaKnown RBP17.69■□□□□ 0.42
CUX1-213ENST00000549414 PPP1R3GB7ZBB8 358 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 GYPCP04921 128 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 NMT1P30419 496 aaKnown RBP17.69■□□□□ 0.42
CUX1-213ENST00000549414 PRELPP51888 382 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 SNX1Q13596 522 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 PPP1R21Q6ZMI0 780 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 WRNIP1Q96S55 665 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 PCDHB4Q9Y5E5 795 aa17.69■□□□□ 0.42
CUX1-213ENST00000549414 MYO1FO00160 1098 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 PGRMC1O00264 195 aaKnown RBP17.68■□□□□ 0.42
CUX1-213ENST00000549414 TBC1D8O95759 1140 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 MARK3P27448 753 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 ADCY8P40145 1251 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 PPP4CP60510 307 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 PPP4R3CPQ6ZMV5 832 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 CABS1Q96KC9 395 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 TMEM206Q9H813 350 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 MED4Q9NPJ6 270 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 ANKRD26Q9UPS8 1709 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 SLC16A4O15374 487 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 RGS16O15492 202 aaPredicted RBP17.68■□□□□ 0.42
CUX1-213ENST00000549414 ATP1A1P05023 1023 aaKnown RBP17.68■□□□□ 0.42
CUX1-213ENST00000549414 NBPF3Q9H094 633 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 COMMD10Q9Y6G5 202 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 RHOBTB3O94955 611 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 MTMR3Q13615 1198 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 STRIP1Q5VSL9 837 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 CC2D1AQ6P1N0 951 aaPredicted RBP17.68■□□□□ 0.42
CUX1-213ENST00000549414 PROM2Q8N271 834 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 NRBP2Q9NSY0 501 aa17.68■□□□□ 0.42
CUX1-213ENST00000549414 PLTPP55058 493 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms