RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 KIF23Q02241 960 aaPredicted RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 SRBD1Q8N5C6 995 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 SPATS2LQ9NUQ6 558 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 SALL1Q9NSC2 1324 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 TLDC2A0PJX2 215 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 CTAGE15A4D2H0 777 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 CTAGE8P0CG41 777 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 SRGAP2CP0DJJ0 459 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 ZNF75DP51815 510 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 TFAMQ00059 246 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 HDLBPQ00341 1268 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 MYL5Q02045 173 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 TTLL4Q14679 1199 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 C15orf52Q6ZUT6 534 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 CTAGE6Q86UF2 777 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 CTAGE4Q8IX94 777 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 GPR161Q8N6U8 529 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 PARK7Q99497 189 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 EPC1Q9H2F5 836 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 TFRCP02786 760 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 CYP2B6P20813 491 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 PAK1Q13153 545 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 CLUL1Q15846 466 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 RASGRP2Q7LDG7 609 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 CNGA4Q8IV77 575 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 EFCAB13Q8IY85 973 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 OXER1Q8TDS5 423 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 ANKRD36BP1Q96IX9 119 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 NUCKS1Q9H1E3 243 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 MKRN1Q9UHC7 482 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 HERC5Q9UII4 1024 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 NUP98P52948 1817 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 PFDN6O15212 129 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 PRPF3O43395 683 aaKnown RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 PSAPP07602 524 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 HOXA13P31271 388 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 RHBDL3P58872 404 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 CDC37Q16543 378 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 SLC9C1Q4G0N8 1177 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 TADA2BQ86TJ2 420 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 PPM1KQ8N3J5 372 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 RMDN3Q96TC7 470 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 CCDC68Q9H2F9 335 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 LRRC4Q9HBW1 653 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 ZDHHC9Q9Y397 364 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 CAPN7Q9Y6W3 813 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 USP27XA6NNY8 438 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 YY1P25490 414 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 OSTNP61366 133 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 FAM160A1Q05DH4 1040 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 SNAPC2Q13487 334 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 NBPF12Q5TAG4 269 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 MYOCDQ8IZQ8 938 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 SLC17A8Q8NDX2 589 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 RNF139Q8WU17 664 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 EXOC4Q96A65 974 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 NAP1L3Q99457 506 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 SLF1Q9BQI6 1058 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 PDE11AQ9HCR9 933 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 PPANQ9NQ55 473 aaKnown RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 RNF146Q9NTX7 359 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 ARMCX3Q9UH62 379 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 C4BP0C0L5 1744 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 RNF8O76064 485 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 C6orf222P0C671 652 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 COPB2P35606 906 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 STAT3P40763 770 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 ARID5BQ14865 1188 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 UBL4BQ8N7F7 174 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 CBX8Q9HC52 389 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 KMT5AQ9NQR1 393 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 CTAGE9A4FU28 777 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 GOLGA6CA6NDK9 693 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 GOLGA6BA6NDN3 693 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 ATP2C2O75185 946 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 MMP1P03956 469 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 GOLGA6DP0CG33 693 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 RPS12P25398 132 aaKnown RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 CDC25AP30304 524 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 NEDD9Q14511 834 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 KRT81Q14533 505 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 ZNF384Q8TF68 577 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 ZKSCAN4Q969J2 545 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 GJA10Q969M2 543 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 MMP19Q99542 508 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 MED4Q9NPJ6 270 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 GOLGA6AQ9NYA3 693 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-218ENST00000545889 MYO1AQ9UBC5 1043 aa9.35□□□□□ -0.91
CLIP1-218ENST00000545889 PDS5AQ29RF7 1337 aaKnown RBP9.34□□□□□ -0.91
CLIP1-218ENST00000545889 RECQLP46063 649 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-218ENST00000545889 HMGCS2P54868 508 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 KLHL30Q0D2K2 578 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 PSMD2Q13200 908 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 PTGDRQ13258 359 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 ACER1Q8TDN7 264 aa9.34□□□□□ -0.91
CLIP1-218ENST00000545889 KCNB2Q92953 911 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms