RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 CCNT1O60563 726 aaKnown RBP14.04□□□□□ -0.16
VPS33A-207ENST00000542790 TDP2O95551 362 aa14.04□□□□□ -0.16
VPS33A-207ENST00000542790 CD4P01730 458 aa14.04□□□□□ -0.16
VPS33A-207ENST00000542790 SYN1P17600 705 aa14.04□□□□□ -0.16
VPS33A-207ENST00000542790 KRT76Q01546 638 aa14.04□□□□□ -0.16
VPS33A-207ENST00000542790 UTP14CQ5TAP6 766 aaKnown RBP14.04□□□□□ -0.16
VPS33A-207ENST00000542790 GLG1Q92896 1179 aa14.04□□□□□ -0.16
VPS33A-207ENST00000542790 TRPV6Q9H1D0 765 aa14.04□□□□□ -0.16
VPS33A-207ENST00000542790 SMARCAD1Q9H4L7 1026 aa14.04□□□□□ -0.16
VPS33A-207ENST00000542790 AZI2Q9H6S1 392 aa14.04□□□□□ -0.16
VPS33A-207ENST00000542790 FRMPD3Q5JV73 1810 aa14.04□□□□□ -0.16
VPS33A-207ENST00000542790 TRIM43BA6NCK2 446 aa14.03□□□□□ -0.16
VPS33A-207ENST00000542790 FAM205CA6NFA0 338 aa14.03□□□□□ -0.16
VPS33A-207ENST00000542790 DDX39AO00148 427 aaKnown RBP14.03□□□□□ -0.16
VPS33A-207ENST00000542790 B4GALT4O60513 344 aa14.03□□□□□ -0.16
VPS33A-207ENST00000542790 GAS7O60861 476 aa14.03□□□□□ -0.16
VPS33A-207ENST00000542790 ATG7O95352 703 aa14.03□□□□□ -0.16
VPS33A-207ENST00000542790 SLC34A2O95436 690 aa14.03□□□□□ -0.16
VPS33A-207ENST00000542790 CCNE2O96020 404 aa14.03□□□□□ -0.16
VPS33A-207ENST00000542790 ZNF746Q6NUN9 644 aaPredicted RBP14.03□□□□□ -0.16
VPS33A-207ENST00000542790 SMAP1Q8IYB5 467 aaPredicted RBP14.03□□□□□ -0.16
VPS33A-207ENST00000542790 SLC5A5Q92911 643 aa14.03□□□□□ -0.16
VPS33A-207ENST00000542790 TRIM43Q96BQ3 446 aaPredicted RBP14.03□□□□□ -0.16
VPS33A-207ENST00000542790 INTS4Q96HW7 963 aaKnown RBP14.03□□□□□ -0.16
VPS33A-207ENST00000542790 UIMC1Q96RL1 719 aa14.03□□□□□ -0.16
VPS33A-207ENST00000542790 LBHD1Q9BQE6 289 aaPredicted RBP14.03□□□□□ -0.16
VPS33A-207ENST00000542790 ERAP1Q9NZ08 941 aa14.03□□□□□ -0.16
VPS33A-207ENST00000542790 TBX21Q9UL17 535 aa14.03□□□□□ -0.16
VPS33A-207ENST00000542790 NOD1Q9Y239 953 aa14.03□□□□□ -0.16
VPS33A-207ENST00000542790 EMSYQ7Z589 1322 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 H3BQV1 296 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 TBX3O15119 743 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 MARCH6O60337 910 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 RAG1P15918 1043 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 SLC26A2P50443 739 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 LRCH2Q5VUJ6 765 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 LARP1BQ659C4 914 aaKnown RBP14.02□□□□□ -0.17
VPS33A-207ENST00000542790 MIS18BP1Q6P0N0 1132 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 ABHD15Q6UXT9 468 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 PLPPR4Q7Z2D5 763 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 SH3RF1Q7Z6J0 888 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 TRIM50Q86XT4 487 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 NOSTRINQ8IVI9 506 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 HSCBQ8IWL3 235 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 ETNPPLQ8TBG4 499 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 TNPO1Q92973 898 aaKnown RBP14.02□□□□□ -0.17
VPS33A-207ENST00000542790 FAM20AQ96MK3 541 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 TEKT3Q9BXF9 490 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 TRMT13Q9NUP7 481 aaKnown RBP14.02□□□□□ -0.17
VPS33A-207ENST00000542790 HDAC6Q9UBN7 1215 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 GTF2IRD1Q9UHL9 959 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 PCDHA10Q9Y5I2 948 aa14.02□□□□□ -0.17
VPS33A-207ENST00000542790 IGKV6D-21A0A0A0MT36 114 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 WDR64B1ANS9 1081 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 BACH1O14867 736 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 SLC37A4O43826 429 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 LGR5O75473 907 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 PSMD10O75832 226 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 TIMP1P01033 207 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 GNAT1P11488 350 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 PDCP20941 246 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 U2AF2P26368 475 aaKnown RBP eCLIP14.01□□□□□ -0.17
VPS33A-207ENST00000542790 SFNP31947 248 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 STAT5BP51692 787 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 PTGISQ16647 500 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 FAM160B1Q5W0V3 765 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 PPP1R13LQ8WUF5 828 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 HS3ST6Q96QI5 342 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 RNPEPQ9H4A4 650 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 KCNMB3Q9NPA1 279 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 SAMM50Q9Y512 469 aa14.01□□□□□ -0.17
VPS33A-207ENST00000542790 C17orf102A2RUQ5 167 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 BAG4O95429 457 aaKnown RBP14□□□□□ -0.17
VPS33A-207ENST00000542790 PSAPP07602 524 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 SMIM10L2AP0DMW4 78 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 SMIM10L2BP0DMW5 78 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 ATP2B1P20020 1258 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 MAGEA10P43363 369 aaPredicted RBP14□□□□□ -0.17
VPS33A-207ENST00000542790 TRAPPC10P48553 1259 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 JAK3P52333 1124 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 MCTP1Q6DN14 999 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 GDF6Q6KF10 455 aaPredicted RBP14□□□□□ -0.17
VPS33A-207ENST00000542790 SWSAP1Q6NVH7 229 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 SLFN12Q8IYM2 578 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 RDM1Q8NG50 284 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 AFAP1L1Q8TED9 768 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 PCYT2Q99447 389 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 HIPK3Q9H422 1215 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 ZNF302Q9NR11 478 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 DISC1Q9NRI5 854 aa14□□□□□ -0.17
VPS33A-207ENST00000542790 NOL7Q9UMY1 257 aaKnown RBP14□□□□□ -0.17
VPS33A-207ENST00000542790 NRCAMQ92823 1304 aa13.99□□□□□ -0.17
VPS33A-207ENST00000542790 NEMFO60524 1076 aa13.99□□□□□ -0.17
VPS33A-207ENST00000542790 CYP2C9P11712 490 aa13.99□□□□□ -0.17
VPS33A-207ENST00000542790 MARK3P27448 753 aa13.99□□□□□ -0.17
VPS33A-207ENST00000542790 MDM2Q00987 491 aaPredicted RBP13.99□□□□□ -0.17
VPS33A-207ENST00000542790 ORC2Q13416 577 aaPredicted RBP13.99□□□□□ -0.17
VPS33A-207ENST00000542790 BFSP2Q13515 415 aa13.99□□□□□ -0.17
VPS33A-207ENST00000542790 CCDC155Q8N6L0 562 aa13.99□□□□□ -0.17
VPS33A-207ENST00000542790 HAS1Q92839 578 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms