RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 DDX60Q8IY21 1712 aaKnown RBP11.81□□□□□ -0.52
CLIP1-213ENST00000540338 POTEJP0CG39 1038 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 CDR1P51861 262 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 Q4G0T1 1027 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 TATDN1Q6P1N9 297 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 KCTD17Q8N5Z5 321 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 SYT2Q8N9I0 419 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-213ENST00000540338 AGBL3Q8NEM8 1001 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 CTNNBL1Q8WYA6 563 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-213ENST00000540338 VPS18Q9P253 973 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 C4AP0C0L4 1744 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 C4BP0C0L5 1744 aa11.81□□□□□ -0.52
CLIP1-213ENST00000540338 PPP1R11O60927 126 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-213ENST00000540338 EPHA7Q15375 998 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 CC2D1AQ6P1N0 951 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-213ENST00000540338 OTUD6AQ7L8S5 288 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 IRF2BP1Q8IU81 584 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 TRIM10Q9UDY6 481 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 ADAMTS1Q9UHI8 967 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 PLAGL2Q9UPG8 496 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 PHACTR2O75167 634 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 H2AFZP0C0S5 128 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 RNASE9P60153 205 aaKnown RBP11.8□□□□□ -0.52
CLIP1-213ENST00000540338 RASA3Q14644 834 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 ARHGAP44Q17R89 818 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 H2AFVQ71UI9 128 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 FRMD5Q7Z6J6 570 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 ZNF507Q8TCN5 953 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 U2AF1L4Q8WU68 220 aaKnown RBP11.8□□□□□ -0.52
CLIP1-213ENST00000540338 POLR3CQ9BUI4 534 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-213ENST00000540338 SEL1LQ9UBV2 794 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 ATF5Q9Y2D1 282 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-213ENST00000540338 HSF2BPO75031 334 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 EIF2AK2P19525 551 aaKnown RBP11.8□□□□□ -0.52
CLIP1-213ENST00000540338 TTLL12Q14166 644 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-213ENST00000540338 FAM102BQ5T8I3 360 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 NEK9Q8TD19 979 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 GCNT4Q9P109 453 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 TAF1P21675 1872 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 CACNA1SQ13698 1873 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 FERP16591 822 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 APTXQ7Z2E3 356 aaKnown RBP11.8□□□□□ -0.52
CLIP1-213ENST00000540338 CENPHQ9H3R5 247 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 RAVER2Q9HCJ3 691 aaKnown RBP11.8□□□□□ -0.52
CLIP1-213ENST00000540338 HDAC6Q9UBN7 1215 aa11.8□□□□□ -0.52
CLIP1-213ENST00000540338 ZHX1Q9UKY1 873 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-213ENST00000540338 NRAPQ86VF7 1730 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 SRGAP2O75044 1071 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 GFPT1Q06210 699 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-213ENST00000540338 WDR78Q5VTH9 848 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 CCDC155Q8N6L0 562 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 IFT74Q96LB3 600 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 MYH13Q9UKX3 1938 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 MEIS2O14770 477 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 CAP2P40123 477 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 IFT81Q8WYA0 676 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 TMEM206Q9H813 350 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 SYNPO2Q9UMS6 1093 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 ARAP2Q8WZ64 1704 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 CASZ1Q86V15 1759 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 BTAF1O14981 1849 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 GOLGA6L10A0A0M3HER8 536 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 N4BP1O75113 896 aaKnown RBP11.79□□□□□ -0.52
CLIP1-213ENST00000540338 ATP1A1P05023 1023 aaKnown RBP11.79□□□□□ -0.52
CLIP1-213ENST00000540338 SKIDA1Q1XH10 827 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 C10orf76Q5T2E6 689 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 PEX26Q7Z412 305 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 TEX2Q8IWB9 1127 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 SYCE1Q8N0S2 351 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 BANK1Q8NDB2 785 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 MLXIPQ9HAP2 919 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 KCNMB3Q9NPA1 279 aa11.79□□□□□ -0.52
CLIP1-213ENST00000540338 CYP3A7-CYP3A51PA0A087WV96 503 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 SSU72P8A0A1W2PR75 194 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 CEP104O60308 925 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 CYP3A7P24462 503 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 CDK17Q00537 523 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 PRKG1Q13976 671 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 COBLL1Q53SF7 1204 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 UTP14CQ5TAP6 766 aaKnown RBP11.78□□□□□ -0.52
CLIP1-213ENST00000540338 ACCSQ96QU6 501 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 MPHOSPH6Q99547 160 aaKnown RBP11.78□□□□□ -0.52
CLIP1-213ENST00000540338 LXNQ9BS40 222 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 H2AFXP16104 143 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-213ENST00000540338 EHHADHQ08426 723 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 MTMR1Q13613 665 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 GNPTABQ3T906 1256 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 PADI6Q6TGC4 694 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 IFT20Q8IY31 132 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 RNF10Q8N5U6 811 aaKnown RBP11.78□□□□□ -0.52
CLIP1-213ENST00000540338 SLC16A10Q8TF71 515 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 LPAR1Q92633 364 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 FBXO28Q9NVF7 368 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 OPA1O60313 960 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 P4HBP07237 508 aaKnown RBP11.78□□□□□ -0.52
CLIP1-213ENST00000540338 MYL7Q01449 175 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 RNF207Q6ZRF8 634 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 LRRN4CLQ8ND94 238 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 ABCB6Q9NP58 842 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 TBC1D22BQ9NU19 505 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms