RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 C17orf80Q9BSJ5 609 aa15.9■□□□□ 0.14
SYNE1-235ENST00000537033 BARHL2Q9NY43 387 aa15.9■□□□□ 0.14
SYNE1-235ENST00000537033 NFASCO94856 1347 aa15.9■□□□□ 0.14
SYNE1-235ENST00000537033 REV3LO60673 3130 aa15.9■□□□□ 0.14
SYNE1-235ENST00000537033 RRN3P2A6NIE6 340 aa15.89■□□□□ 0.13
SYNE1-235ENST00000537033 STXBP3O00186 592 aa15.89■□□□□ 0.13
SYNE1-235ENST00000537033 CHRNA1P02708 482 aa15.89■□□□□ 0.13
SYNE1-235ENST00000537033 GHRP10912 638 aa15.89■□□□□ 0.13
SYNE1-235ENST00000537033 METAP2P50579 478 aaKnown RBP eCLIP15.89■□□□□ 0.13
SYNE1-235ENST00000537033 IGBP1P78318 339 aa15.89■□□□□ 0.13
SYNE1-235ENST00000537033 FUT2Q10981 343 aa15.89■□□□□ 0.13
SYNE1-235ENST00000537033 PTPROQ16827 1216 aa15.89■□□□□ 0.13
SYNE1-235ENST00000537033 CEP55Q53EZ4 464 aa15.89■□□□□ 0.13
SYNE1-235ENST00000537033 TYW1BQ6NUM6 668 aa15.89■□□□□ 0.13
SYNE1-235ENST00000537033 PGBD1Q96JS3 809 aa15.89■□□□□ 0.13
SYNE1-235ENST00000537033 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.88■□□□□ 0.13
SYNE1-235ENST00000537033 MBLAC1A4D2B0 266 aaPredicted RBP15.88■□□□□ 0.13
SYNE1-235ENST00000537033 M0QZ92 97 aa15.88■□□□□ 0.13
SYNE1-235ENST00000537033 SREBF1P36956 1147 aa15.88■□□□□ 0.13
SYNE1-235ENST00000537033 ACTR2P61160 394 aa15.88■□□□□ 0.13
SYNE1-235ENST00000537033 CCDC12Q8WUD4 166 aaPredicted RBP15.88■□□□□ 0.13
SYNE1-235ENST00000537033 DNAJB3Q8WWF6 145 aa15.88■□□□□ 0.13
SYNE1-235ENST00000537033 OSBPL7Q9BZF2 842 aa15.88■□□□□ 0.13
SYNE1-235ENST00000537033 INSRRP14616 1297 aa15.87■□□□□ 0.13
SYNE1-235ENST00000537033 MRPS6P82932 125 aaKnown RBP15.87■□□□□ 0.13
SYNE1-235ENST00000537033 LPIN1Q14693 890 aa15.87■□□□□ 0.13
SYNE1-235ENST00000537033 EPC2Q52LR7 807 aa15.87■□□□□ 0.13
SYNE1-235ENST00000537033 TIGD5Q53EQ6 642 aa15.87■□□□□ 0.13
SYNE1-235ENST00000537033 IER5Q5VY09 327 aa15.87■□□□□ 0.13
SYNE1-235ENST00000537033 BLOC1S2Q6QNY1 142 aa15.87■□□□□ 0.13
SYNE1-235ENST00000537033 TSHZ1Q6ZSZ6 1077 aa15.87■□□□□ 0.13
SYNE1-235ENST00000537033 CYP2W1Q8TAV3 490 aa15.87■□□□□ 0.13
SYNE1-235ENST00000537033 IL17RAQ96F46 866 aa15.87■□□□□ 0.13
SYNE1-235ENST00000537033 JAKMIP1Q96N16 626 aaKnown RBP15.87■□□□□ 0.13
SYNE1-235ENST00000537033 NECAB3Q96P71 396 aaPredicted RBP15.87■□□□□ 0.13
SYNE1-235ENST00000537033 FAM49AQ9H0Q0 323 aaPredicted RBP15.87■□□□□ 0.13
SYNE1-235ENST00000537033 AGO4Q9HCK5 861 aaKnown RBP15.87■□□□□ 0.13
SYNE1-235ENST00000537033 CDY2AQ9Y6F7 541 aa15.87■□□□□ 0.13
SYNE1-235ENST00000537033 RBAK-RBAKDNI3L0D1 243 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 ARP10275 920 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 SCG2P13521 617 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 CDC27P30260 824 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 SLC26A2P50443 739 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 STAT5BP51692 787 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 AKAP17AQ02040 695 aaKnown RBP15.86■□□□□ 0.13
SYNE1-235ENST00000537033 MGAT3Q09327 533 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 PFKFB3Q16875 520 aaPredicted RBP15.86■□□□□ 0.13
SYNE1-235ENST00000537033 FBXO47Q5MNV8 452 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 MARCH8Q5T0T0 291 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 FAM160B1Q5W0V3 765 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 MCTP2Q6DN12 878 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 Q6ZUG5 572 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 NIPA1Q7RTP0 329 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 PLPPR4Q7Z2D5 763 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 TMEM192Q8IY95 271 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 FIBCD1Q8N539 461 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 MRPL38Q96DV4 380 aaKnown RBP15.86■□□□□ 0.13
SYNE1-235ENST00000537033 CCDC136Q96JN2 1154 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 PCYT2Q99447 389 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 TMEM260Q9NX78 707 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 TCEAL9Q9UHQ7 104 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 RWDD3Q9Y3V2 267 aa15.86■□□□□ 0.13
SYNE1-235ENST00000537033 POTEB3A0JP26 581 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 DDX39AO00148 427 aaKnown RBP15.85■□□□□ 0.13
SYNE1-235ENST00000537033 MEIS1O00470 390 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 BACH1O14867 736 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 REC8O95072 547 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 CLK2P49760 499 aaKnown RBP15.85■□□□□ 0.13
SYNE1-235ENST00000537033 APOBRQ0VD83 1088 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 ITGB3BPQ13352 177 aaPredicted RBP15.85■□□□□ 0.13
SYNE1-235ENST00000537033 GPM6BQ13491 265 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 PLCB4Q15147 1175 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 JAKMIP3Q5VZ66 844 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 POTEBQ6S5H4 581 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 PLA2G4DQ86XP0 818 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 REXO1Q8N1G1 1221 aaKnown RBP15.85■□□□□ 0.13
SYNE1-235ENST00000537033 BRF1Q92994 677 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 UBE2ZQ9H832 354 aaPredicted RBP15.85■□□□□ 0.13
SYNE1-235ENST00000537033 C6orf50Q9HD87 102 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 FAM217BQ9NTX9 383 aaPredicted RBP15.85■□□□□ 0.13
SYNE1-235ENST00000537033 TRPV2Q9Y5S1 764 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 SQORQ9Y6N5 450 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 LOXHD1Q8IVV2 1947 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 ADGRA3Q8IWK6 1321 aa15.85■□□□□ 0.13
SYNE1-235ENST00000537033 NCOR1O75376 2440 aa15.84■□□□□ 0.13
SYNE1-235ENST00000537033 XIRP2A4UGR9 3374 aa15.84■□□□□ 0.13
SYNE1-235ENST00000537033 ESYT2A0FGR8 921 aa15.84■□□□□ 0.13
SYNE1-235ENST00000537033 H3BNC9 293 aa15.84■□□□□ 0.13
SYNE1-235ENST00000537033 PSMA5P28066 241 aa15.84■□□□□ 0.13
SYNE1-235ENST00000537033 GNA11P29992 359 aa15.84■□□□□ 0.13
SYNE1-235ENST00000537033 HSPA4P34932 840 aa15.84■□□□□ 0.13
SYNE1-235ENST00000537033 CTNNB1P35222 781 aa15.84■□□□□ 0.13
SYNE1-235ENST00000537033 ADD1P35611 737 aaKnown RBP15.84■□□□□ 0.13
SYNE1-235ENST00000537033 SETQ01105 290 aaPredicted RBP15.84■□□□□ 0.13
SYNE1-235ENST00000537033 MIS18BP1Q6P0N0 1132 aa15.84■□□□□ 0.13
SYNE1-235ENST00000537033 FTHL17Q9BXU8 183 aa15.84■□□□□ 0.13
SYNE1-235ENST00000537033 PCDHA2Q9Y5H9 948 aa15.84■□□□□ 0.13
SYNE1-235ENST00000537033 NID2Q14112 1375 aa15.84■□□□□ 0.13
SYNE1-235ENST00000537033 MUC3AQ02505 3323 aa15.83■□□□□ 0.13
SYNE1-235ENST00000537033 IPO5O00410 1097 aaKnown RBP15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms