RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	LMBR1	Q8WVP7	490 aa		13.29	□□□□□ -0.28
CTNND1-238	ENST00000534647	MAP4K1	Q92918	833 aa		13.29	□□□□□ -0.28
CTNND1-238	ENST00000534647	PABPC5	Q96DU9	382 aa	Known RBP	13.29	□□□□□ -0.28
CTNND1-238	ENST00000534647	RTEL1	Q9NZ71	1219 aa		13.29	□□□□□ -0.28
CTNND1-238	ENST00000534647	SGSM2	O43147	1006 aa		13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	DDAH1	O94760	285 aa		13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	CHRNA1	P02708	482 aa		13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	KIF5B	P33176	963 aa		13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	ANTXR2	P58335	489 aa		13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	PTCRA	Q6ISU1	281 aa	Predicted RBP	13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	TMTC2	Q8N394	836 aa		13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	SMARCC2	Q8TAQ2	1214 aa		13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	CUL5	Q93034	780 aa		13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	GPRASP2	Q96D09	838 aa		13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	RRP36	Q96EU6	259 aa	Known RBP	13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	IL17RA	Q96F46	866 aa		13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	CDHR1	Q96JP9	859 aa		13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	IFIH1	Q9BYX4	1025 aa	Known RBP	13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	TAF6L	Q9Y6J9	622 aa		13.28	□□□□□ -0.28
CTNND1-238	ENST00000534647	MICAL3	Q7RTP6	2002 aa		13.27	□□□□□ -0.28
CTNND1-238	ENST00000534647	MBLAC1	A4D2B0	266 aa	Predicted RBP	13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	PRR33	A8MZF0	331 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	MAFG	O15525	162 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	RPLP2	P05387	115 aa	Known RBP	13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	CTSH	P09668	335 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	LINC00271	P0C7V0	271 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	ALAD	P13716	330 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	GNAQ	P50148	359 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	ARHGAP4	P98171	946 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	USP17L6P	Q6QN14	398 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	TRIM50	Q86XT4	487 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	CTCFL	Q8NI51	663 aa	Predicted RBP	13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	SEPT1	Q8WYJ6	367 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	LMAN2L	Q9H0V9	348 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	NSUN3	Q9H649	340 aa	Known RBP	13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	PRKAG3	Q9UGI9	489 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	FAM50B	Q9Y247	325 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	RWDD3	Q9Y3V2	267 aa		13.27	□□□□□ -0.29
CTNND1-238	ENST00000534647	POTEB3	A0JP26	581 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	UPP2	O95045	317 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	IL9	P15248	144 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	KCNA2	P16389	499 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	TCF7	P36402	384 aa	Predicted RBP	13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	BMPR1A	P36894	532 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	MGAT3	Q09327	533 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	CTC1	Q2NKJ3	1217 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	TCEAL5	Q5H9L2	206 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	UTP14C	Q5TAP6	766 aa	Known RBP	13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	POTEB	Q6S5H4	581 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	RSPH3	Q86UC2	560 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	TEX2	Q8IWB9	1127 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	ZNF654	Q8IZM8	581 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	FIBCD1	Q8N539	461 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	CLP1	Q92989	425 aa	Known RBP	13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	ZNF689	Q96CS4	500 aa	Predicted RBP	13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	PSTPIP2	Q9H939	334 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	RC3H2	Q9HBD1	1191 aa	Known RBP	13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	LY9	Q9HBG7	655 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	ERAP1	Q9NZ08	941 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	TELO2	Q9Y4R8	837 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	UBIAD1	Q9Y5Z9	338 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	SQOR	Q9Y6N5	450 aa		13.26	□□□□□ -0.29
CTNND1-238	ENST00000534647	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	GSTTP1	A0A1W2PQM5	241 aa		13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	C19orf67	A6NJJ6	358 aa		13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	RBAK-RBAKDN	I3L0D1	243 aa		13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	ENPP3	O14638	875 aa		13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	ATP9A	O75110	1047 aa		13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	ITGB5	P18084	799 aa		13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	LPIN1	Q14693	890 aa		13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	MARCH8	Q5T0T0	291 aa		13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	CRIPAK	Q8N1N5	446 aa		13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	TMEM87B	Q96K49	555 aa		13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	C11orf84	Q9BUA3	381 aa	Predicted RBP	13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	REPIN1	Q9BWE0	567 aa	Known RBP	13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	PLVAP	Q9BX97	442 aa		13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	SMARCAD1	Q9H4L7	1026 aa		13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	SEC63	Q9UGP8	760 aa	Known RBP	13.25	□□□□□ -0.29
CTNND1-238	ENST00000534647	RRN3P2	A6NIE6	340 aa		13.24	□□□□□ -0.29
CTNND1-238	ENST00000534647	CALM1	P0DP23	149 aa		13.24	□□□□□ -0.29
CTNND1-238	ENST00000534647	CALM2	P0DP24	149 aa		13.24	□□□□□ -0.29
CTNND1-238	ENST00000534647	CALM3	P0DP25	149 aa		13.24	□□□□□ -0.29
CTNND1-238	ENST00000534647	LTBR	P36941	435 aa		13.24	□□□□□ -0.29
CTNND1-238	ENST00000534647	LIFR	P42702	1097 aa		13.24	□□□□□ -0.29
CTNND1-238	ENST00000534647	PPFIA1	Q13136	1202 aa		13.24	□□□□□ -0.29
CTNND1-238	ENST00000534647	FBXO47	Q5MNV8	452 aa		13.24	□□□□□ -0.29
CTNND1-238	ENST00000534647	RUFY4	Q6ZNE9	571 aa		13.24	□□□□□ -0.29
CTNND1-238	ENST00000534647	SRBD1	Q8N5C6	995 aa	Known RBP	13.24	□□□□□ -0.29
CTNND1-238	ENST00000534647	PIBF1	Q8WXW3	757 aa		13.24	□□□□□ -0.29
CTNND1-238	ENST00000534647	ADGRA3	Q8IWK6	1321 aa		13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647		H3BQ06	376 aa	Predicted RBP	13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	DGKI	O75912	1065 aa		13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	GHR	P10912	638 aa		13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	SSTR3	P32745	418 aa	Predicted RBP	13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	MCM5	P33992	734 aa		13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	ZP2	Q05996	745 aa		13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	GRIK4	Q16099	956 aa		13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	NAALADL2	Q58DX5	795 aa		13.23	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms