RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CCL23P55773 120 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 PLCB4Q15147 1175 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 C16orf59Q7L2K0 433 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 SERINC5Q86VE9 423 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 CCDC60Q8IWA6 550 aaPredicted RBP22.45■■□□□ 1.18
CPSF1-209ENST00000532725 HAS1Q92839 578 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 ATP6V0A1Q93050 837 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 TEKT3Q9BXF9 490 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 UNC45AQ9H3U1 944 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 SMC3Q9UQE7 1217 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 MAFBQ9Y5Q3 323 aaPredicted RBP22.45■■□□□ 1.18
CPSF1-209ENST00000532725 NRCAMQ92823 1304 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 KIF28PB7ZC32 967 aa22.44■■□□□ 1.18
CPSF1-209ENST00000532725 TBX3O15119 743 aa22.44■■□□□ 1.18
CPSF1-209ENST00000532725 GNAT1P11488 350 aa22.44■■□□□ 1.18
CPSF1-209ENST00000532725 ATP4AP20648 1035 aa22.44■■□□□ 1.18
CPSF1-209ENST00000532725 U2AF2P26368 475 aaKnown RBP eCLIP22.44■■□□□ 1.18
CPSF1-209ENST00000532725 SLC26A2P50443 739 aa22.44■■□□□ 1.18
CPSF1-209ENST00000532725 RBL2Q08999 1139 aa22.44■■□□□ 1.18
CPSF1-209ENST00000532725 BFSP2Q13515 415 aa22.44■■□□□ 1.18
CPSF1-209ENST00000532725 TRIP12Q14669 1992 aaPredicted RBP22.44■■□□□ 1.18
CPSF1-209ENST00000532725 TRIM71Q2Q1W2 868 aaKnown RBP22.44■■□□□ 1.18
CPSF1-209ENST00000532725 FAM160B1Q5W0V3 765 aa22.44■■□□□ 1.18
CPSF1-209ENST00000532725 CAGE1Q8TC20 777 aa22.44■■□□□ 1.18
CPSF1-209ENST00000532725 WNT8BQ93098 351 aa22.44■■□□□ 1.18
CPSF1-209ENST00000532725 ZNF302Q9NR11 478 aa22.44■■□□□ 1.18
CPSF1-209ENST00000532725 DISC1Q9NRI5 854 aa22.44■■□□□ 1.18
CPSF1-209ENST00000532725 WDR64B1ANS9 1081 aa22.43■■□□□ 1.18
CPSF1-209ENST00000532725 BACH1O14867 736 aa22.43■■□□□ 1.18
CPSF1-209ENST00000532725 PSAPP07602 524 aa22.43■■□□□ 1.18
CPSF1-209ENST00000532725 INSRRP14616 1297 aa22.43■■□□□ 1.18
CPSF1-209ENST00000532725 PPIGQ13427 754 aaKnown RBP eCLIP22.43■■□□□ 1.181e-10■■■□□ 15.8
CPSF1-209ENST00000532725 NOSTRINQ8IVI9 506 aa22.43■■□□□ 1.18
CPSF1-209ENST00000532725 TDHQ8IZJ6 230 aa22.43■■□□□ 1.18
CPSF1-209ENST00000532725 RETREG2Q8NC44 543 aa22.43■■□□□ 1.18
CPSF1-209ENST00000532725 LMBR1Q8WVP7 490 aa22.43■■□□□ 1.18
CPSF1-209ENST00000532725 SNX21Q969T3 373 aa22.43■■□□□ 1.18
CPSF1-209ENST00000532725 VWCEQ96DN2 955 aa22.43■■□□□ 1.18
CPSF1-209ENST00000532725 TCEAL9Q9UHQ7 104 aa22.43■■□□□ 1.18
CPSF1-209ENST00000532725 POTEB3A0JP26 581 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 IQCF3P0C7M6 154 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 SFNP31947 248 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 PPFIA1Q13136 1202 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 SHHQ15465 462 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 GRIK4Q16099 956 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 C9orf50Q5SZB4 431 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 MARCH8Q5T0T0 291 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 PDXDC2PQ6P474 469 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 POTEBQ6S5H4 581 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 POTEDQ86YR6 584 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 SCLYQ96I15 445 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 SAMM50Q9Y512 469 aa22.42■■□□□ 1.18
CPSF1-209ENST00000532725 MBLAC1A4D2B0 266 aaPredicted RBP22.41■■□□□ 1.18
CPSF1-209ENST00000532725 RRN3P2A6NIE6 340 aa22.41■■□□□ 1.18
CPSF1-209ENST00000532725 CHMP2AO43633 222 aa22.41■■□□□ 1.18
CPSF1-209ENST00000532725 CKBP12277 381 aa22.41■■□□□ 1.18
CPSF1-209ENST00000532725 JAK3P52333 1124 aa22.41■■□□□ 1.18
CPSF1-209ENST00000532725 CCDC155Q8N6L0 562 aa22.41■■□□□ 1.18
CPSF1-209ENST00000532725 RDM1Q8NG50 284 aa22.41■■□□□ 1.18
CPSF1-209ENST00000532725 TNPO1Q92973 898 aaKnown RBP22.41■■□□□ 1.18
CPSF1-209ENST00000532725 IL23AQ9NPF7 189 aa22.41■■□□□ 1.18
CPSF1-209ENST00000532725 GABBR1Q9UBS5 961 aa22.41■■□□□ 1.18
CPSF1-209ENST00000532725 VAV3Q9UKW4 847 aa22.41■■□□□ 1.18
CPSF1-209ENST00000532725 K7ELQ4 463 aaPredicted RBP22.4■■□□□ 1.18
CPSF1-209ENST00000532725 ACRP10323 421 aa22.4■■□□□ 1.18
CPSF1-209ENST00000532725 ATP2B1P20020 1258 aa22.4■■□□□ 1.18
CPSF1-209ENST00000532725 PPP2R5CQ13362 524 aa22.4■■□□□ 1.18
CPSF1-209ENST00000532725 GPNMBQ14956 572 aa22.4■■□□□ 1.18
CPSF1-209ENST00000532725 LARP1BQ659C4 914 aaKnown RBP22.4■■□□□ 1.18
CPSF1-209ENST00000532725 TRAF7Q6Q0C0 670 aa22.4■■□□□ 1.18
CPSF1-209ENST00000532725 MIER3Q7Z3K6 550 aa22.4■■□□□ 1.18
CPSF1-209ENST00000532725 ATP8B4Q8TF62 1192 aa22.4■■□□□ 1.18
CPSF1-209ENST00000532725 MTMR9Q96QG7 549 aa22.4■■□□□ 1.18
CPSF1-209ENST00000532725 TRPC6Q9Y210 931 aa22.4■■□□□ 1.18
CPSF1-209ENST00000532725 EML1O00423 815 aa22.39■■□□□ 1.17
CPSF1-209ENST00000532725 HBP1O60381 514 aa22.39■■□□□ 1.17
CPSF1-209ENST00000532725 BAG4O95429 457 aaKnown RBP22.39■■□□□ 1.17
CPSF1-209ENST00000532725 SELPP16109 830 aa22.39■■□□□ 1.17
CPSF1-209ENST00000532725 GNL2Q13823 731 aaKnown RBP22.39■■□□□ 1.17
CPSF1-209ENST00000532725 TMEM240Q5SV17 173 aa22.39■■□□□ 1.17
CPSF1-209ENST00000532725 ZNF618Q5T7W0 954 aa22.39■■□□□ 1.17
CPSF1-209ENST00000532725 SLFN12Q8IYM2 578 aa22.39■■□□□ 1.17
CPSF1-209ENST00000532725 RPUSD2Q8IZ73 545 aaKnown RBP22.39■■□□□ 1.17
CPSF1-209ENST00000532725 INTS4Q96HW7 963 aaKnown RBP22.39■■□□□ 1.17
CPSF1-209ENST00000532725 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.39■■□□□ 1.172e-20■□□□□ 9.4
CPSF1-209ENST00000532725 KAT6AQ92794 2004 aa22.39■■□□□ 1.17
CPSF1-209ENST00000532725 ZNF862O60290 1169 aa22.38■■□□□ 1.17
CPSF1-209ENST00000532725 MARCH6O60337 910 aa22.38■■□□□ 1.17
CPSF1-209ENST00000532725 RFC2P35250 354 aa22.38■■□□□ 1.17
CPSF1-209ENST00000532725 TRAPPC10P48553 1259 aa22.38■■□□□ 1.17
CPSF1-209ENST00000532725 TOB1P50616 345 aaPredicted RBP22.38■■□□□ 1.17
CPSF1-209ENST00000532725 IGBP1P78318 339 aa22.38■■□□□ 1.17
CPSF1-209ENST00000532725 ZNF174Q15697 407 aa22.38■■□□□ 1.17
CPSF1-209ENST00000532725 RUFY4Q6ZNE9 571 aa22.38■■□□□ 1.17
CPSF1-209ENST00000532725 ZNF365Q70YC5 407 aa22.38■■□□□ 1.17
CPSF1-209ENST00000532725 LRRC8DQ7L1W4 858 aa22.38■■□□□ 1.17
CPSF1-209ENST00000532725 BBXQ8WY36 941 aaPredicted RBP22.38■■□□□ 1.17
CPSF1-209ENST00000532725 TMEM60Q9H2L4 133 aa22.38■■□□□ 1.17
CPSF1-209ENST00000532725 IGSF9BQ9UPX0 1349 aa22.37■■□□□ 1.17
CPSF1-209ENST00000532725 ZBTB42B2RXF5 422 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms