RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SPC25Q9HBM1 224 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 DLL4Q9NR61 685 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.43□□□□□ -1.54
CD44-233ENST00000531141 ZNF839A8K0R7 811 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 DNAJC6O75061 913 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 KRT37O76014 449 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 PLA2G1BP04054 148 aaKnown RBP5.42□□□□□ -1.54
CD44-233ENST00000531141 ZBTB48P10074 688 aaPredicted RBP5.42□□□□□ -1.54
CD44-233ENST00000531141 AOAHP28039 575 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 SDHAP31040 664 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 FNTBP49356 437 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 OCRLQ01968 901 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 PCBP1Q15365 356 aaKnown RBP eCLIP5.42□□□□□ -1.54
CD44-233ENST00000531141 ZNF174Q15697 407 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 CT47A1Q5JQC4 288 aaPredicted RBP5.42□□□□□ -1.54
CD44-233ENST00000531141 CC2D1AQ6P1N0 951 aaPredicted RBP5.42□□□□□ -1.54
CD44-233ENST00000531141 PROSER1Q86XN7 944 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 TMEM151BQ8IW70 566 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 EFHBQ8N7U6 833 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 TTLL6Q8N841 843 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 LINC00482Q8N8I6 264 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 DTX3Q8N9I9 347 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 KYQ8NBH2 561 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 LEO1Q8WVC0 666 aaPredicted RBP5.42□□□□□ -1.54
CD44-233ENST00000531141 CLIC6Q96NY7 704 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 C11orf84Q9BUA3 381 aaPredicted RBP5.42□□□□□ -1.54
CD44-233ENST00000531141 EPB41L4AQ9HCS5 686 aaPredicted RBP5.42□□□□□ -1.54
CD44-233ENST00000531141 SBNO2Q9Y2G9 1366 aa5.42□□□□□ -1.54
CD44-233ENST00000531141 ZNF891A8MT65 544 aaPredicted RBP5.41□□□□□ -1.54
CD44-233ENST00000531141 FOXP2O15409 715 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 THBS2P35442 1172 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 LSSP48449 732 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 KIF11P52732 1056 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 DBPQ10586 325 aaPredicted RBP5.41□□□□□ -1.54
CD44-233ENST00000531141 ADAM9Q13443 819 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 SART3Q15020 963 aaKnown RBP5.41□□□□□ -1.54
CD44-233ENST00000531141 SEC23AQ15436 765 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 ZNF124Q15973 351 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 CREB3L3Q68CJ9 461 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 CIAPIN1Q6FI81 312 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 TMC5Q6UXY8 1006 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 FAM177A1Q8N128 213 aaPredicted RBP5.41□□□□□ -1.54
CD44-233ENST00000531141 KIAA1958Q8N8K9 716 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 FNIP1Q8TF40 1166 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 ZBTB8AQ96BR9 441 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 PWWP2AQ96N64 755 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 TOX2Q96NM4 488 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 NOX5Q96PH1 765 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 ACSS2Q9NR19 701 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 ARHGAP28Q9P2N2 729 aa5.41□□□□□ -1.54
CD44-233ENST00000531141 APOBEC2Q9Y235 224 aaKnown RBP5.41□□□□□ -1.54
CD44-233ENST00000531141 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.4□□□□□ -1.54
CD44-233ENST00000531141 NUAK1O60285 661 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 CYP7B1O75881 506 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 ENO2P09104 434 aaPredicted RBP5.4□□□□□ -1.54
CD44-233ENST00000531141 ATP2A2P16615 1042 aaKnown RBP5.4□□□□□ -1.54
CD44-233ENST00000531141 CNGA1P29973 690 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 SCNN1BP51168 640 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 SKOR2Q2VWA4 1001 aaPredicted RBP5.4□□□□□ -1.54
CD44-233ENST00000531141 VWA3BQ502W6 1294 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 LIPIQ6XZB0 460 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 DDX46Q7L014 1031 aaKnown RBP5.4□□□□□ -1.54
CD44-233ENST00000531141 FILIP1Q7Z7B0 1213 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 SAPCD2Q86UD0 394 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 AFAP1L2Q8N4X5 818 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 SMC1BQ8NDV3 1235 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 IGDCC4Q8TDY8 1250 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 USP7Q93009 1102 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 DACT3Q96B18 629 aaPredicted RBP5.4□□□□□ -1.54
CD44-233ENST00000531141 OXSMQ9NWU1 459 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 ASB1Q9Y576 335 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 SPO11Q9Y5K1 396 aa5.4□□□□□ -1.54
CD44-233ENST00000531141 SH3D21A4FU49 640 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 CYP17A1P05093 508 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 MMEP08473 750 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 CPEP16870 476 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 BPIP17213 487 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 PTGS1P23219 599 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 AFF3P51826 1226 aaKnown RBP5.39□□□□□ -1.55
CD44-233ENST00000531141 KPNA1P52294 538 aaPredicted RBP5.39□□□□□ -1.55
CD44-233ENST00000531141 IL2P60568 153 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 TMEM132BQ14DG7 1078 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 SKIDA1Q1XH10 827 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 CATSPEREQ5SY80 951 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 ZNF662Q6ZS27 426 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 C11orf74Q86VG3 221 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 CILP2Q8IUL8 1156 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 ASB15Q8WXK1 588 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 E2F7Q96AV8 911 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 SCYL1Q96KG9 808 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 ZSWIM3Q96MP5 696 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 IFT57Q9NWB7 429 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 THG1LQ9NWX6 298 aaKnown RBP5.39□□□□□ -1.55
CD44-233ENST00000531141 NTMQ9P121 344 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 BTBD7Q9P203 1132 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 RBPJLQ9UBG7 517 aa5.39□□□□□ -1.55
CD44-233ENST00000531141 LOC105371045A0A1W2PR82 267 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 RASSF10A6NK89 507 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 DBX1A6NMT0 343 aa5.38□□□□□ -1.55
CD44-233ENST00000531141 DVL2O14641 736 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms