RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 P2RX5Q93086 422 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 OSBP2Q969R2 916 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 DAXXQ9UER7 740 aaPredicted RBP9.68□□□□□ -0.86
CD44-232ENST00000531118 ATRXP46100 2492 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 LOXHD1Q8IVV2 1947 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 FRMPD2Q68DX3 1309 aaPredicted RBP9.67□□□□□ -0.86
CD44-232ENST00000531118 C17orf102A2RUQ5 167 aa9.67□□□□□ -0.86
CD44-232ENST00000531118 NMT2O60551 498 aa9.67□□□□□ -0.86
CD44-232ENST00000531118 ITGB1P05556 798 aa9.67□□□□□ -0.86
CD44-232ENST00000531118 BTG3Q14201 252 aaPredicted RBP9.67□□□□□ -0.86
CD44-232ENST00000531118 SWT1Q5T5J6 900 aaKnown RBP9.67□□□□□ -0.86
CD44-232ENST00000531118 APPBP2Q92624 585 aa9.67□□□□□ -0.86
CD44-232ENST00000531118 BCL11AQ9H165 835 aa9.67□□□□□ -0.86
CD44-232ENST00000531118 PLAGL2Q9UPG8 496 aa9.67□□□□□ -0.86
CD44-232ENST00000531118 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.67□□□□□ -0.86
CD44-232ENST00000531118 PCDHGC5Q9Y5F6 944 aa9.67□□□□□ -0.86
CD44-232ENST00000531118 MRPL42Q9Y6G3 142 aaKnown RBP9.67□□□□□ -0.86
CD44-232ENST00000531118 FNDC1Q4ZHG4 1894 aaPredicted RBP9.67□□□□□ -0.86
CD44-232ENST00000531118 FAM208BQ5VWN6 2430 aa9.67□□□□□ -0.86
CD44-232ENST00000531118 WDR87Q6ZQQ6 2873 aa9.67□□□□□ -0.86
CD44-232ENST00000531118 GPR179Q6PRD1 2367 aa9.66□□□□□ -0.86
CD44-232ENST00000531118 M0R2C6 588 aa9.66□□□□□ -0.86
CD44-232ENST00000531118 RLBP1P12271 317 aa9.66□□□□□ -0.86
CD44-232ENST00000531118 GNAT2P19087 354 aa9.66□□□□□ -0.86
CD44-232ENST00000531118 SP100P23497 879 aaPredicted RBP9.66□□□□□ -0.86
CD44-232ENST00000531118 RBM10P98175 930 aaKnown RBP9.66□□□□□ -0.86
CD44-232ENST00000531118 MTMR3Q13615 1198 aa9.66□□□□□ -0.86
CD44-232ENST00000531118 RBM23Q86U06 439 aaKnown RBP9.66□□□□□ -0.86
CD44-232ENST00000531118 KREMEN2Q8NCW0 462 aa9.66□□□□□ -0.86
CD44-232ENST00000531118 VN1R2Q8NFZ6 395 aa9.66□□□□□ -0.86
CD44-232ENST00000531118 ATP6V0A1Q93050 837 aa9.66□□□□□ -0.86
CD44-232ENST00000531118 ZNF689Q96CS4 500 aaPredicted RBP9.66□□□□□ -0.86
CD44-232ENST00000531118 GPCPD1Q9NPB8 672 aa9.66□□□□□ -0.86
CD44-232ENST00000531118 DDX41Q9UJV9 622 aaKnown RBP9.66□□□□□ -0.86
CD44-232ENST00000531118 PNMA2Q9UL42 364 aa9.66□□□□□ -0.86
CD44-232ENST00000531118 MRVI1Q9Y6F6 885 aa9.66□□□□□ -0.86
CD44-232ENST00000531118 PKD1L2Q7Z442 2459 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 CCDC171Q6TFL3 1326 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 TSPY2A6NKD2 308 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 TREHO43280 583 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 BRD1O95696 1058 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 SMIM10L2AP0DMW4 78 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 SMIM10L2BP0DMW5 78 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 PPARAQ07869 468 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 LAMC2Q13753 1193 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 PUM1Q14671 1186 aaKnown RBP eCLIP9.65□□□□□ -0.86
CD44-232ENST00000531118 USH1GQ495M9 461 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 CWF19L1Q69YN2 538 aaKnown RBP9.65□□□□□ -0.86
CD44-232ENST00000531118 UBALD2Q8IYN6 164 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 IFNL3Q8IZI9 196 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 SPPL3Q8TCT6 385 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 POF1BQ8WVV4 589 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 RNF166Q96A37 237 aaPredicted RBP9.65□□□□□ -0.86
CD44-232ENST00000531118 SMOC2Q9H3U7 446 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 IL17RBQ9NRM6 502 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 COL20A1Q9P218 1284 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 SORCS3Q9UPU3 1222 aa9.65□□□□□ -0.86
CD44-232ENST00000531118 CFAP47Q6ZTR5 3102 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 SORBS3O60504 671 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 APPP05067 770 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 SLC3A2P08195 630 aaKnown RBP9.64□□□□□ -0.87
CD44-232ENST00000531118 GHRP10912 638 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 NOVP48745 357 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 STXBP2Q15833 593 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 NAALADL2Q58DX5 795 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 THSD4Q6ZMP0 1018 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 CMTR2Q8IYT2 770 aaKnown RBP9.64□□□□□ -0.87
CD44-232ENST00000531118 KLHL23Q8NBE8 558 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 SYTL5Q8TDW5 730 aaPredicted RBP9.64□□□□□ -0.87
CD44-232ENST00000531118 ATP8B4Q8TF62 1192 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 LINC01599Q8WXQ3 324 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 KCTD12Q96CX2 325 aaKnown RBP9.64□□□□□ -0.87
CD44-232ENST00000531118 NEK1Q96PY6 1258 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 C16orf70Q9BSU1 422 aa9.64□□□□□ -0.87
CD44-232ENST00000531118 FSD2A1L4K1 749 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 DGKIO75912 1065 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 LGALS2P05162 132 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 EIF2AK2P19525 551 aaKnown RBP9.63□□□□□ -0.87
CD44-232ENST00000531118 DUSP6Q16828 381 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 HSDL1Q3SXM5 330 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 FAM26DQ5JW98 314 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 CCDC105Q8IYK2 499 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 KIAA2013Q8IYS2 634 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 KBTBD3Q8NAB2 608 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 RGS22Q8NE09 1264 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 NSUN6Q8TEA1 469 aaKnown RBP9.63□□□□□ -0.87
CD44-232ENST00000531118 SPATA33Q96N06 139 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 TAAR1Q96RJ0 339 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 IWS1Q96ST2 819 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 CDCA3Q99618 268 aaPredicted RBP9.63□□□□□ -0.87
CD44-232ENST00000531118 TMUB1Q9BVT8 246 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 NACAP1Q9BZK3 213 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 NAPBQ9H115 298 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 MFSD1Q9H3U5 465 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 TLE6Q9H808 572 aa9.63□□□□□ -0.87
CD44-232ENST00000531118 ABCB11O95342 1321 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 C2CD4DB7Z1M9 353 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 RNF113AO15541 343 aaKnown RBP9.62□□□□□ -0.87
CD44-232ENST00000531118 GGPS1O95749 300 aa9.62□□□□□ -0.87
CD44-232ENST00000531118 SRGAP2BP0DMP2 458 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms