RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 GNL2Q13823 731 aaKnown RBP8.43□□□□□ -1.06
CD44-228ENST00000528455 PLS1Q14651 629 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 RILPL1Q5EBL4 403 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 SNRNP48Q6IEG0 339 aaKnown RBP8.43□□□□□ -1.06
CD44-228ENST00000528455 KRT25Q7Z3Z0 450 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 REXO1Q8N1G1 1221 aaKnown RBP8.43□□□□□ -1.06
CD44-228ENST00000528455 TBC1D5Q92609 795 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 ZNF396Q96N95 335 aaPredicted RBP8.43□□□□□ -1.06
CD44-228ENST00000528455 MOV10L1Q9BXT6 1211 aaKnown RBP8.43□□□□□ -1.06
CD44-228ENST00000528455 BIN2Q9UBW5 565 aaPredicted RBP8.43□□□□□ -1.06
CD44-228ENST00000528455 CPA4Q9UI42 421 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 HTTP42858 3142 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 CENPFP49454 3210 aa8.43□□□□□ -1.06
CD44-228ENST00000528455 TNRC18O15417 2968 aaPredicted RBP8.43□□□□□ -1.06
CD44-228ENST00000528455 CCDC194A0A1B0GVG4 234 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 CFBP00751 764 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 SNRPBP14678 240 aaKnown RBP8.42□□□□□ -1.06
CD44-228ENST00000528455 HOXD10P28358 340 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 PSMC4P43686 418 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 PRMT2P55345 433 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 FOXK2Q01167 660 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 FAM110CQ1W6H9 321 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 MUM1L1Q5H9M0 696 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 USP17L6PQ6QN14 398 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 RNF207Q6ZRF8 634 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 ABRAQ8N0Z2 381 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 TNPO1Q92973 898 aaKnown RBP8.42□□□□□ -1.06
CD44-228ENST00000528455 NAP1L4Q99733 375 aaKnown RBP8.42□□□□□ -1.06
CD44-228ENST00000528455 PAGR1Q9BTK6 254 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 ACAD9Q9H845 621 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 TXNRD2Q9NNW7 524 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 SCHIP1Q9P0W5 487 aaPredicted RBP8.42□□□□□ -1.06
CD44-228ENST00000528455 USP3Q9Y6I4 520 aa8.42□□□□□ -1.06
CD44-228ENST00000528455 LOC102724159A0A0B4J2E5 919 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 SPDYE3A6NKU9 549 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 SOBPA7XYQ1 873 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 KIF28PB7ZC32 967 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 CDK2AP1O14519 115 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 CYP3A4P08684 503 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 BCRP11274 1271 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 FCER1AP12319 257 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 ERCC3P19447 782 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 MAPK4P31152 587 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 RPS6P62753 249 aaKnown RBP8.41□□□□□ -1.06
CD44-228ENST00000528455 CAP1Q01518 475 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 ORC2Q13416 577 aaPredicted RBP8.41□□□□□ -1.06
CD44-228ENST00000528455 NONOQ15233 471 aaKnown RBP eCLIP8.41□□□□□ -1.06
CD44-228ENST00000528455 PWP2Q15269 919 aaKnown RBP8.41□□□□□ -1.06
CD44-228ENST00000528455 SLC9C1Q4G0N8 1177 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 JAKMIP3Q5VZ66 844 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 PPP4R3AQ6IN85 833 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 XRRA1Q6P2D8 792 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 FERMT3Q86UX7 667 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 NCAPG2Q86XI2 1143 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 CCAR1Q8IX12 1150 aaKnown RBP8.41□□□□□ -1.06
CD44-228ENST00000528455 ZNF295-AS1Q8N0V1 137 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 ANKRD13CQ8N6S4 541 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 DNERQ8NFT8 737 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 ARMC5Q96C12 935 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 IWS1Q96ST2 819 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 ARHGAP39Q9C0H5 1083 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 SCAND2PQ9GZW5 306 aaPredicted RBP8.41□□□□□ -1.06
CD44-228ENST00000528455 EHMT1Q9H9B1 1298 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 RNF146Q9NTX7 359 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 CYP39A1Q9NYL5 469 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 RTEL1Q9NZ71 1219 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 RCOR1Q9UKL0 485 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 NOL7Q9UMY1 257 aaKnown RBP8.41□□□□□ -1.06
CD44-228ENST00000528455 PTCH2Q9Y6C5 1203 aa8.41□□□□□ -1.06
CD44-228ENST00000528455 A0A0G2JMZ2 1700 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 PFASO15067 1338 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 ADGRA2Q96PE1 1338 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 CYP3A7-CYP3A51PA0A087WV96 503 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 B4DLN1 442 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 SPATA31C2B4DYI2 1134 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 NFIBO00712 420 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 ADAMTS3O15072 1205 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 MAFGO15525 162 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 MAN1A2O60476 641 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 LGR5O75473 907 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 CYP3A7P24462 503 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 HOXA13P31271 388 aaPredicted RBP8.4□□□□□ -1.06
CD44-228ENST00000528455 SREBF1P36956 1147 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 TOB1P50616 345 aaPredicted RBP8.4□□□□□ -1.06
CD44-228ENST00000528455 FCGRTP55899 365 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 BAATQ14032 418 aaPredicted RBP8.4□□□□□ -1.06
CD44-228ENST00000528455 KCTD2Q14681 263 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 SWI5Q1ZZU3 235 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 MOXD1Q6UVY6 613 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 PIK3AP1Q6ZUJ8 805 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 LYSMD3Q7Z3D4 306 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 PRICKLE2Q7Z3G6 844 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 ANKRD35Q8N283 1001 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 RETREG2Q8NC44 543 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 SYTL5Q8TDW5 730 aaPredicted RBP8.4□□□□□ -1.06
CD44-228ENST00000528455 NSUN6Q8TEA1 469 aaKnown RBP8.4□□□□□ -1.06
CD44-228ENST00000528455 TBCKQ8TEA7 893 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 CRYGNQ8WXF5 182 aa8.4□□□□□ -1.06
CD44-228ENST00000528455 FOXD4L4Q8WXT5 416 aaPredicted RBP8.4□□□□□ -1.06
CD44-228ENST00000528455 HINFPQ9BQA5 517 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms