RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 RETREG2Q8NC44 543 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 DAGLBQ8NCG7 672 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 GIMAP8Q8ND71 665 aaPredicted RBP12.14□□□□□ -0.47
CD44-227ENST00000528086 TIFAQ96CG3 184 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 MBOAT7Q96N66 472 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 PHF20Q9BVI0 1012 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 NKX2-4Q9H2Z4 354 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 PCDHA4Q9UN74 947 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 NOD1Q9Y239 953 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 STK36Q9NRP7 1315 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 COL4A6Q14031 1691 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 VCANP13611 3396 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 EPOPA6NHQ4 379 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 IPO5O00410 1097 aaKnown RBP12.13□□□□□ -0.47
CD44-227ENST00000528086 WNT7AO00755 349 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 MSH4O15457 936 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 JAK2O60674 1132 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 TDP2O95551 362 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 INSRRP14616 1297 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 GNA11P29992 359 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 THPOP40225 353 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 WDR5P61964 334 aaKnown RBP12.13□□□□□ -0.47
CD44-227ENST00000528086 GRIK4Q16099 956 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 FAM26DQ5JW98 314 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.13□□□□□ -0.47
CD44-227ENST00000528086 NSUN7Q8NE18 718 aaKnown RBP12.13□□□□□ -0.47
CD44-227ENST00000528086 DBF4BQ8NFT6 615 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 TBCKQ8TEA7 893 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 TNFRSF25Q93038 417 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 GTF3C6Q969F1 213 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 ZNF576Q9H609 170 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 EHMT1Q9H9B1 1298 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 ERAP1Q9NZ08 941 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 SLC4A7Q9Y6M7 1214 aa12.13□□□□□ -0.47
CD44-227ENST00000528086 SPTBN5Q9NRC6 3674 aaKnown RBP12.13□□□□□ -0.47
CD44-227ENST00000528086 NRCAMQ92823 1304 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 TMEM265A0A087WTH1 108 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 CYP3A7-CYP3A51PA0A087WV96 503 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 LCHNA4D1U4 455 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 RSPH10B2B2RC85 870 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 ZNF862O60290 1169 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 CTSHP09668 335 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 RSPH10BP0C881 870 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 ATP2A2P16615 1042 aaKnown RBP12.12□□□□□ -0.47
CD44-227ENST00000528086 CYP3A7P24462 503 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 NEK4P51957 841 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 NLRP5P59047 1200 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 AKAP17AQ02040 695 aaKnown RBP12.12□□□□□ -0.47
CD44-227ENST00000528086 PPFIA1Q13136 1202 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 PRR16Q569H4 304 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 PLEKHG4Q58EX7 1191 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 PLPPR4Q7Z2D5 763 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 RPAINQ86UA6 219 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 BLIDQ8IZY5 108 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 USP38Q8NB14 1042 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 CCDC148Q8NFR7 591 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 CCDC12Q8WUD4 166 aaPredicted RBP12.12□□□□□ -0.47
CD44-227ENST00000528086 SLC5A5Q92911 643 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 SLKQ9H2G2 1235 aaPredicted RBP12.12□□□□□ -0.47
CD44-227ENST00000528086 SMARCAD1Q9H4L7 1026 aa12.12□□□□□ -0.47
CD44-227ENST00000528086 ZNF215Q9UL58 517 aaPredicted RBP12.12□□□□□ -0.47
CD44-227ENST00000528086 PRRC2BQ5JSZ5 2229 aaKnown RBP12.11□□□□□ -0.47
CD44-227ENST00000528086 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.11□□□□□ -0.47
CD44-227ENST00000528086 ZBBXA8MT70 800 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 CPLX1O14810 134 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 SLC37A4O43826 429 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 STBD1O95210 358 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 ZNF76P36508 570 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 STAT5BP51692 787 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 USP11P51784 963 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 CNKSR3Q6P9H4 555 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 HERC6Q8IVU3 1022 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 TRIM22Q8IYM9 498 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 CCDC155Q8N6L0 562 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 ETNPPLQ8TBG4 499 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 GLG1Q92896 1179 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 SDF4Q9BRK5 362 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 ZNF577Q9BSK1 485 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 FTOQ9C0B1 505 aaKnown RBP eCLIP12.11□□□□□ -0.47
CD44-227ENST00000528086 ORC3Q9UBD5 711 aaPredicted RBP12.11□□□□□ -0.47
CD44-227ENST00000528086 TTC3P53804 2025 aa12.11□□□□□ -0.47
CD44-227ENST00000528086 PSMD10O75832 226 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 BAIAP3O94812 1187 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 IGBP1P78318 339 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 TAP1Q03518 808 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 NR5A1Q13285 461 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 LPIN1Q14693 890 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 UGCGQ16739 394 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 INF2Q27J81 1249 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 Q4G0T1 1027 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 SWSAP1Q6NVH7 229 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 BICD2Q8TD16 824 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 DNAJB3Q8WWF6 145 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 LINC01599Q8WXQ3 324 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 UNC45AQ9H3U1 944 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 PRDM12Q9H4Q4 367 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 AGO3Q9H9G7 860 aaKnown RBP12.1□□□□□ -0.47
CD44-227ENST00000528086 CDHR5Q9HBB8 845 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 TUBE1Q9UJT0 475 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 PCDHA11Q9Y5I1 949 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms