RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ZNF689Q96CS4 500 aaPredicted RBP27.05■■□□□ 1.92
CPSF1-202ENST00000527827 TMEM87BQ96K49 555 aa27.05■■□□□ 1.92
CPSF1-202ENST00000527827 SMARCAD1Q9H4L7 1026 aa27.05■■□□□ 1.92
CPSF1-202ENST00000527827 CLDND1Q9NY35 253 aa27.05■■□□□ 1.92
CPSF1-202ENST00000527827 CDY2AQ9Y6F7 541 aa27.05■■□□□ 1.92
CPSF1-202ENST00000527827 LOXHD1Q8IVV2 1947 aa27.05■■□□□ 1.92
CPSF1-202ENST00000527827 PRR33A8MZF0 331 aa27.04■■□□□ 1.92
CPSF1-202ENST00000527827 TSHZ1Q6ZSZ6 1077 aa27.04■■□□□ 1.92
CPSF1-202ENST00000527827 RAB11FIP4Q86YS3 637 aa27.04■■□□□ 1.92
CPSF1-202ENST00000527827 ZBTB10Q96DT7 871 aa27.04■■□□□ 1.92
CPSF1-202ENST00000527827 PCYT2Q99447 389 aa27.04■■□□□ 1.92
CPSF1-202ENST00000527827 C11orf84Q9BUA3 381 aaPredicted RBP27.04■■□□□ 1.92
CPSF1-202ENST00000527827 LMAN2LQ9H0V9 348 aa27.04■■□□□ 1.92
CPSF1-202ENST00000527827 JADE2Q9NQC1 790 aa27.04■■□□□ 1.92
CPSF1-202ENST00000527827 PCDHA6Q9UN73 950 aa27.04■■□□□ 1.92
CPSF1-202ENST00000527827 RWDD3Q9Y3V2 267 aa27.04■■□□□ 1.92
CPSF1-202ENST00000527827 PCDHA8Q9Y5H6 950 aa27.04■■□□□ 1.92
CPSF1-202ENST00000527827 MUC6Q6W4X9 2439 aa27.04■■□□□ 1.92
CPSF1-202ENST00000527827 LIFRP42702 1097 aa27.03■■□□□ 1.92
CPSF1-202ENST00000527827 CTC1Q2NKJ3 1217 aa27.03■■□□□ 1.92
CPSF1-202ENST00000527827 LINC01599Q8WXQ3 324 aa27.03■■□□□ 1.92
CPSF1-202ENST00000527827 LSG1Q9H089 658 aaKnown RBP27.03■■□□□ 1.92
CPSF1-202ENST00000527827 AGO3Q9H9G7 860 aaKnown RBP27.03■■□□□ 1.92
CPSF1-202ENST00000527827 POTEB3A0JP26 581 aa27.02■■□□□ 1.92
CPSF1-202ENST00000527827 SPDYE3A6NKU9 549 aa27.02■■□□□ 1.92
CPSF1-202ENST00000527827 MAFGO15525 162 aa27.02■■□□□ 1.92
CPSF1-202ENST00000527827 CALM1P0DP23 149 aa27.02■■□□□ 1.92
CPSF1-202ENST00000527827 CALM2P0DP24 149 aa27.02■■□□□ 1.92
CPSF1-202ENST00000527827 CALM3P0DP25 149 aa27.02■■□□□ 1.92
CPSF1-202ENST00000527827 ALADP13716 330 aa27.02■■□□□ 1.92
CPSF1-202ENST00000527827 IGBP1P78318 339 aa27.02■■□□□ 1.92
CPSF1-202ENST00000527827 MRPS6P82932 125 aaKnown RBP27.02■■□□□ 1.92
CPSF1-202ENST00000527827 ZP2Q05996 745 aa27.02■■□□□ 1.92
CPSF1-202ENST00000527827 POTEBQ6S5H4 581 aa27.02■■□□□ 1.92
CPSF1-202ENST00000527827 CCDC82Q8N4S0 544 aa27.02■■□□□ 1.92
CPSF1-202ENST00000527827 KIAA1671Q9BY89 1806 aa27.02■■□□□ 1.92
CPSF1-202ENST00000527827 SLC27A2O14975 620 aa27.01■■□□□ 1.91
CPSF1-202ENST00000527827 NCK2O43639 380 aa27.01■■□□□ 1.91
CPSF1-202ENST00000527827 DGKIO75912 1065 aa27.01■■□□□ 1.91
CPSF1-202ENST00000527827 INSRRP14616 1297 aa27.01■■□□□ 1.91
CPSF1-202ENST00000527827 HYAL1Q12794 435 aa27.01■■□□□ 1.91
CPSF1-202ENST00000527827 BTG3Q14201 252 aaPredicted RBP27.01■■□□□ 1.91
CPSF1-202ENST00000527827 TMTC3Q6ZXV5 915 aa27.01■■□□□ 1.91
CPSF1-202ENST00000527827 RTN4RL1Q86UN2 441 aaPredicted RBP27.01■■□□□ 1.91
CPSF1-202ENST00000527827 CRIPAKQ8N1N5 446 aa27.01■■□□□ 1.91
CPSF1-202ENST00000527827 PRKAG3Q9UGI9 489 aa27.01■■□□□ 1.91
CPSF1-202ENST00000527827 FAM50BQ9Y247 325 aa27.01■■□□□ 1.91
CPSF1-202ENST00000527827 RRN3P2A6NIE6 340 aa27■■□□□ 1.91
CPSF1-202ENST00000527827 C19orf67A6NJJ6 358 aa27■■□□□ 1.91
CPSF1-202ENST00000527827 CD52P31358 61 aa27■■□□□ 1.91
CPSF1-202ENST00000527827 DLX2Q07687 328 aaPredicted RBP27■■□□□ 1.91
CPSF1-202ENST00000527827 FANCBQ8NB91 859 aa27■■□□□ 1.91
CPSF1-202ENST00000527827 FAM49AQ9H0Q0 323 aaPredicted RBP27■■□□□ 1.91
CPSF1-202ENST00000527827 JPH1Q9HDC5 661 aaPredicted RBP27■■□□□ 1.91
CPSF1-202ENST00000527827 LRRC2Q9BYS8 371 aa26.99■■□□□ 1.91
CPSF1-202ENST00000527827 KCNH7Q9NS40 1196 aa26.99■■□□□ 1.91
CPSF1-202ENST00000527827 SLC9A2Q9UBY0 812 aa26.99■■□□□ 1.91
CPSF1-202ENST00000527827 SLC12A7Q9Y666 1083 aa26.99■■□□□ 1.91
CPSF1-202ENST00000527827 SQORQ9Y6N5 450 aa26.99■■□□□ 1.91
CPSF1-202ENST00000527827 DCXO43602 365 aa26.98■■□□□ 1.91
CPSF1-202ENST00000527827 GTF2F1P35269 517 aaKnown RBP eCLIP26.98■■□□□ 1.91
CPSF1-202ENST00000527827 CAMK1Q14012 370 aa26.98■■□□□ 1.91
CPSF1-202ENST00000527827 IER5Q5VY09 327 aa26.98■■□□□ 1.91
CPSF1-202ENST00000527827 HEATR3Q7Z4Q2 680 aa26.98■■□□□ 1.91
CPSF1-202ENST00000527827 ADHFE1Q8IWW8 467 aa26.98■■□□□ 1.91
CPSF1-202ENST00000527827 CYP2W1Q8TAV3 490 aa26.98■■□□□ 1.91
CPSF1-202ENST00000527827 MXRA8Q9BRK3 442 aa26.98■■□□□ 1.91
CPSF1-202ENST00000527827 PLVAPQ9BX97 442 aa26.98■■□□□ 1.91
CPSF1-202ENST00000527827 ALG13Q9NP73 1137 aaKnown RBP26.98■■□□□ 1.91
CPSF1-202ENST00000527827 C5orf42Q9H799 3197 aa26.97■■□□□ 1.91
CPSF1-202ENST00000527827 MMP1P03956 469 aa26.97■■□□□ 1.91
CPSF1-202ENST00000527827 RPLP2P05387 115 aaKnown RBP26.97■■□□□ 1.91
CPSF1-202ENST00000527827 NECTIN1Q15223 517 aa26.97■■□□□ 1.91
CPSF1-202ENST00000527827 CREB3L3Q68CJ9 461 aa26.97■■□□□ 1.91
CPSF1-202ENST00000527827 SGMS1Q86VZ5 419 aa26.97■■□□□ 1.91
CPSF1-202ENST00000527827 TRAPPC12Q8WVT3 735 aa26.97■■□□□ 1.91
CPSF1-202ENST00000527827 PLAGL2Q9UPG8 496 aa26.97■■□□□ 1.91
CPSF1-202ENST00000527827 TRPV2Q9Y5S1 764 aa26.97■■□□□ 1.91
CPSF1-202ENST00000527827 MRPL42Q9Y6G3 142 aaKnown RBP26.97■■□□□ 1.91
CPSF1-202ENST00000527827 CSPG5O95196 566 aa26.96■■□□□ 1.91
CPSF1-202ENST00000527827 TMEM62Q0P6H9 643 aa26.96■■□□□ 1.91
CPSF1-202ENST00000527827 PLCB4Q15147 1175 aa26.96■■□□□ 1.91
CPSF1-202ENST00000527827 CLUL1Q15846 466 aa26.96■■□□□ 1.91
CPSF1-202ENST00000527827 WWC2Q6AWC2 1192 aa26.96■■□□□ 1.91
CPSF1-202ENST00000527827 TYW1BQ6NUM6 668 aa26.96■■□□□ 1.91
CPSF1-202ENST00000527827 MICU3Q86XE3 530 aa26.96■■□□□ 1.91
CPSF1-202ENST00000527827 ESYT1Q9BSJ8 1104 aa26.96■■□□□ 1.91
CPSF1-202ENST00000527827 FTHL17Q9BXU8 183 aa26.96■■□□□ 1.91
CPSF1-202ENST00000527827 AZI2Q9H6S1 392 aa26.96■■□□□ 1.91
CPSF1-202ENST00000527827 TRPC6Q9Y210 931 aa26.96■■□□□ 1.91
CPSF1-202ENST00000527827 PCDHA2Q9Y5H9 948 aa26.96■■□□□ 1.91
CPSF1-202ENST00000527827 NFASCO94856 1347 aa26.95■■□□□ 1.91
CPSF1-202ENST00000527827 MBTPS2O43462 519 aa26.95■■□□□ 1.9
CPSF1-202ENST00000527827 TBX10O75333 385 aa26.95■■□□□ 1.9
CPSF1-202ENST00000527827 IRS1P35568 1242 aa26.95■■□□□ 1.9
CPSF1-202ENST00000527827 ACTR2P61160 394 aa26.95■■□□□ 1.9
CPSF1-202ENST00000527827 SMAD2Q15796 467 aaKnown RBP26.95■■□□□ 1.9
CPSF1-202ENST00000527827 NPAS4Q8IUM7 802 aa26.95■■□□□ 1.9
CPSF1-202ENST00000527827 CMTR2Q8IYT2 770 aaKnown RBP26.95■■□□□ 1.9
CPSF1-202ENST00000527827 P2RX5Q93086 422 aa26.95■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms