RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 PPM1NQ8N819 430 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 KIAA1958Q8N8K9 716 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 MFSD2AQ8NA29 543 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 NPLOC4Q8TAT6 608 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.44□□□□□ -1.38
USP47-204ENST00000525078 LRTOMTQ8WZ04 291 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 ZNF837Q96EG3 531 aaPredicted RBP6.44□□□□□ -1.38
USP47-204ENST00000525078 GMCL1Q96IK5 515 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 FANCD2OSQ96PS1 177 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 SLC2A13Q96QE2 648 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 SEC62Q99442 399 aaKnown RBP6.44□□□□□ -1.38
USP47-204ENST00000525078 ELF4Q99607 663 aaPredicted RBP6.44□□□□□ -1.38
USP47-204ENST00000525078 ASPNQ9BXN1 380 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 QRSL1Q9H0R6 528 aaKnown RBP6.44□□□□□ -1.38
USP47-204ENST00000525078 PIDD1Q9HB75 910 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 JPH1Q9HDC5 661 aaPredicted RBP6.44□□□□□ -1.38
USP47-204ENST00000525078 DMRT3Q9NQL9 472 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 GPATCH2Q9NW75 528 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 TMEFF2Q9UIK5 374 aaPredicted RBP6.44□□□□□ -1.38
USP47-204ENST00000525078 CORO2BQ9UQ03 480 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 CTDP1Q9Y5B0 961 aaPredicted RBP6.44□□□□□ -1.38
USP47-204ENST00000525078 BACE2Q9Y5Z0 518 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 ITIH6Q6UXX5 1313 aa6.44□□□□□ -1.38
USP47-204ENST00000525078 SLC12A8A0AV02 714 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 K7ENM7 598 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 GPR25O00155 361 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 LCP1P13796 627 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 KRT15P19012 456 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 HTR1BP28222 390 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 SEPHS1P49903 392 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 KCNMA1Q12791 1236 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 KCNAB2Q13303 367 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 SNW1Q13573 536 aaKnown RBP6.43□□□□□ -1.38
USP47-204ENST00000525078 FAM209BQ5JX69 171 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 VPS53Q5VIR6 699 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 E4F1Q66K89 784 aaPredicted RBP6.43□□□□□ -1.38
USP47-204ENST00000525078 RETSATQ6NUM9 610 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 PGBD2Q6P3X8 592 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 CYP26C1Q6V0L0 522 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 SYDE1Q6ZW31 735 aaPredicted RBP6.43□□□□□ -1.38
USP47-204ENST00000525078 PDZD4Q76G19 769 aaPredicted RBP6.43□□□□□ -1.38
USP47-204ENST00000525078 OTOP1Q7RTM1 612 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 KRT77Q7Z794 578 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 CDH24Q86UP0 819 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 OR8H2Q8N162 312 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 COPS5Q92905 334 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 VWCEQ96DN2 955 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 UBXN10Q96LJ8 280 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 LRRC27Q9C0I9 530 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 OSBPL5Q9H0X9 879 aaPredicted RBP6.43□□□□□ -1.38
USP47-204ENST00000525078 UNC45AQ9H3U1 944 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 MBIPQ9NS73 344 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 PRR13Q9NZ81 148 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 PDP2Q9P2J9 529 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 KCNG1Q9UIX4 513 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 CBLCQ9ULV8 474 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 CRYL1Q9Y2S2 319 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 RPGRIP1LQ68CZ1 1315 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 SYNGAP1Q96PV0 1343 aa6.43□□□□□ -1.38
USP47-204ENST00000525078 LCHNA4D1U4 455 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 SLC35F4A4IF30 521 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 NCK2O43639 380 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 LRIG2O94898 1065 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 DLGAP3O95886 979 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 PLS3P13797 630 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 BAG6P46379 1132 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 IRF9Q00978 393 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 STARD3Q14849 445 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 HSF5Q4G112 596 aaPredicted RBP6.42□□□□□ -1.38
USP47-204ENST00000525078 ANO6Q4KMQ2 910 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 EXOSC6Q5RKV6 272 aaKnown RBP6.42□□□□□ -1.38
USP47-204ENST00000525078 C16orf54Q6UWD8 224 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 C4orf50Q6ZRC1 276 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 ARMCX6Q7L4S7 300 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 DAAM2Q86T65 1068 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 KSR1Q8IVT5 923 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.42□□□□□ -1.38
USP47-204ENST00000525078 TTC30BQ8N4P2 665 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 DNAJB8Q8NHS0 232 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 NUP133Q8WUM0 1156 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 RNF141Q8WVD5 230 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 HDAC2Q92769 488 aaKnown RBP6.42□□□□□ -1.38
USP47-204ENST00000525078 ISL2Q96A47 359 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 ARL8AQ96BM9 186 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 CHAMP1Q96JM3 812 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 FBXL18Q96ME1 805 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 KCNJ15Q99712 375 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 MIPEPQ99797 713 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 RIC8AQ9NPQ8 531 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 CLEC1BQ9P126 229 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 SERPINB13Q9UIV8 391 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 PCDHA2Q9Y5H9 948 aa6.42□□□□□ -1.38
USP47-204ENST00000525078 A0A1W2PRQ8 180 aa6.41□□□□□ -1.38
USP47-204ENST00000525078 ADARB2-AS1A8MUL3 147 aa6.41□□□□□ -1.38
USP47-204ENST00000525078 WNT9AO14904 365 aa6.41□□□□□ -1.38
USP47-204ENST00000525078 CAPN3P20807 821 aa6.41□□□□□ -1.38
USP47-204ENST00000525078 ENPP1P22413 925 aa6.41□□□□□ -1.38
USP47-204ENST00000525078 CD40P25942 277 aa6.41□□□□□ -1.38
USP47-204ENST00000525078 ADH6P28332 368 aa6.41□□□□□ -1.38
USP47-204ENST00000525078 GRK3P35626 688 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms