RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 THEGQ9P2T0 379 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 ADAMTS1Q9UHI8 967 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 BCAP29Q9UHQ4 241 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 RABGAP1Q9Y3P9 1069 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 FRMPD2Q68DX3 1309 aaPredicted RBP12.18□□□□□ -0.46
TCOF1-211ENST00000513346 ATF2P15336 505 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 ZNF449Q6P9G9 518 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 LRIG3Q6UXM1 1119 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 FAM133AQ8N9E0 248 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 PANK4Q9NVE7 773 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 NARFQ9UHQ1 456 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 IQGAP1P46940 1657 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 TRIM49BA6NDI0 452 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 RPS6KA5O75582 802 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 LMNB1P20700 586 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 SLC8A3P57103 927 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 PDE1CQ14123 709 aaPredicted RBP12.18□□□□□ -0.46
TCOF1-211ENST00000513346 WDR44Q5JSH3 913 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 SWT1Q5T5J6 900 aaKnown RBP12.18□□□□□ -0.46
TCOF1-211ENST00000513346 ARL6IP4Q66PJ3 421 aaKnown RBP12.18□□□□□ -0.46
TCOF1-211ENST00000513346 ZC3H18Q86VM9 953 aaKnown RBP12.18□□□□□ -0.46
TCOF1-211ENST00000513346 ABTB1Q969K4 478 aaPredicted RBP12.18□□□□□ -0.46
TCOF1-211ENST00000513346 PITPNM3Q9BZ71 974 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 VCPKMTQ9H867 229 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 PSTPIP2Q9H939 334 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 TXNDC16Q9P2K2 825 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 ANGPTL2Q9UKU9 493 aa12.18□□□□□ -0.46
TCOF1-211ENST00000513346 CHGBP05060 677 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 HDLBPQ00341 1268 aaKnown RBP12.17□□□□□ -0.46
TCOF1-211ENST00000513346 DIXDC1Q155Q3 683 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 PDCD2Q16342 344 aaPredicted RBP12.17□□□□□ -0.46
TCOF1-211ENST00000513346 LIN9Q5TKA1 542 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 GPKOWQ92917 476 aaPredicted RBP eCLIP12.17□□□□□ -0.46
TCOF1-211ENST00000513346 CCDC97Q96F63 343 aaPredicted RBP12.17□□□□□ -0.46
TCOF1-211ENST00000513346 DDX23Q9BUQ8 820 aaKnown RBP12.17□□□□□ -0.46
TCOF1-211ENST00000513346 TRIM10Q9UDY6 481 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 EXOC7Q9UPT5 735 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 DCTN3O75935 186 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 CCND1P24385 295 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 RAD23BP54727 409 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 KDM7AQ6ZMT4 941 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 NEK8Q86SG6 692 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 MB21D2Q8IYB1 491 aaPredicted RBP12.17□□□□□ -0.46
TCOF1-211ENST00000513346 ST13P4Q8IZP2 240 aaPredicted RBP12.17□□□□□ -0.46
TCOF1-211ENST00000513346 MASTLQ96GX5 879 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 ETNK1Q9HBU6 452 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 FBXL5Q9UKA1 691 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 PTPN22Q9Y2R2 807 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 COL4A3BPQ9Y5P4 624 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 EIF4E1BA6NMX2 242 aaKnown RBP12.17□□□□□ -0.46
TCOF1-211ENST00000513346 GYPCP04921 128 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 ALAS1P13196 640 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 KRT5P13647 590 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 ADCY1Q08828 1119 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 SLFN13Q68D06 897 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 NAIF1Q69YI7 327 aaPredicted RBP12.17□□□□□ -0.46
TCOF1-211ENST00000513346 NLRX1Q86UT6 975 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 ARHGAP18Q8N392 663 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 GSDMBQ8TAX9 411 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 DBNDD1Q9H9R9 158 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 NOD2Q9HC29 1040 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 PTPRUQ92729 1446 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 PRPF3O43395 683 aaKnown RBP12.17□□□□□ -0.46
TCOF1-211ENST00000513346 GAS7O60861 476 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 GCNT3O95395 438 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 ITIH3Q06033 890 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.17□□□□□ -0.46
TCOF1-211ENST00000513346 MYCT1Q8N699 235 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 MYCBPAPQ8TBZ2 947 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 CCDC17Q96LX7 622 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 SPATA31A1Q5TZJ5 1347 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 KDM3AQ9Y4C1 1321 aa12.17□□□□□ -0.46
TCOF1-211ENST00000513346 PHBP35232 272 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 MSH2P43246 934 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 PABPC4Q13310 644 aaKnown RBP eCLIP12.16□□□□□ -0.463e-6■■■■□ 20.4
TCOF1-211ENST00000513346 GPBP1Q86WP2 473 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 TTC16Q8NEE8 873 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 NSMCE1Q8WV22 266 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 FGD4Q96M96 766 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 DISC1Q9NRI5 854 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 ABCB5Q2M3G0 1257 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 ZNF354CQ86Y25 554 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 TEX9Q8N6V9 391 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 C3orf20Q8ND61 904 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 PAGR1Q9BTK6 254 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 COMMD10Q9Y6G5 202 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 CYP2D7A0A087X1C5 515 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 CCT8L1PA6NM43 557 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 LRRC53A6NM62 1247 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 PHF20L1A8MW92 1017 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 EXOC3O60645 756 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 DNAJC8O75937 253 aaPredicted RBP12.16□□□□□ -0.46
TCOF1-211ENST00000513346 RFC1P35251 1148 aaPredicted RBP12.16□□□□□ -0.46
TCOF1-211ENST00000513346 NCAPHQ15003 741 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 ALKBH5Q6P6C2 394 aaKnown RBP12.16□□□□□ -0.46
TCOF1-211ENST00000513346 OTUD6AQ7L8S5 288 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 TRAPPC11Q7Z392 1133 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 FBXO11Q86XK2 927 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 HAUS1Q96CS2 278 aa12.16□□□□□ -0.46
TCOF1-211ENST00000513346 CLRN2A0PK11 232 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms