RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 LINC00271P0C7V0 271 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 GHRP10912 638 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 ATP4AP20648 1035 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 ADCY7P51828 1080 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 ACTR2P61160 394 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 TMEM62Q0P6H9 643 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 PPFIA1Q13136 1202 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 PLCB4Q15147 1175 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 SKIV2LQ15477 1246 aaKnown RBP12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 NTRK3Q16288 839 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 PFKFB3Q16875 520 aaPredicted RBP12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 GIMAP8Q8ND71 665 aaPredicted RBP12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 SEPT8Q92599 483 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 SYMPKQ92797 1274 aaKnown RBP12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 GLG1Q92896 1179 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 BRF1Q92994 677 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 PHKBQ93100 1093 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 SMARCAD1Q9H4L7 1026 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 ERAP1Q9NZ08 941 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 ZNF215Q9UL58 517 aaPredicted RBP12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 NAP1L2Q9ULW6 460 aaPredicted RBP12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 EMSYQ7Z589 1322 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 TTC3P53804 2025 aa12.78□□□□□ -0.36
LIMCH1-214ENST00000512228 COL4A6Q14031 1691 aa12.77□□□□□ -0.36
LIMCH1-214ENST00000512228 IGLV3-22A0A075B6J6 115 aa12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 DDX39AO00148 427 aaKnown RBP12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 MAFGO15525 162 aa12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 AMHP03971 560 aa12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 GNAT1P11488 350 aa12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 SREBF1P36956 1147 aa12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 CEP55Q53EZ4 464 aa12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 RPAINQ86UA6 219 aa12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 RASGRP4Q8TDF6 673 aa12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 TGS1Q96RS0 853 aaKnown RBP12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 CDHR5Q9HBB8 845 aa12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 JPH1Q9HDC5 661 aaPredicted RBP12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 SLC9A2Q9UBY0 812 aa12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 INSL6Q9Y581 213 aa12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 CDY2AQ9Y6F7 541 aa12.77□□□□□ -0.37
LIMCH1-214ENST00000512228 BRWD1Q9NSI6 2320 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 IGKV6D-21A0A0A0MT36 114 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 ZBTB42B2RXF5 422 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 PRPF3O43395 683 aaKnown RBP12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 GTPBP6O43824 516 aaPredicted RBP12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 EFCAB14O75071 495 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 CAND2O75155 1236 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 SCG2P13521 617 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 RPS6KB1P23443 525 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 EPC2Q52LR7 807 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 FBXO47Q5MNV8 452 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 CRIPAKQ8N1N5 446 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 LINC01599Q8WXQ3 324 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 CCDC136Q96JN2 1154 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 CDHR1Q96JP9 859 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 AGXT2Q9BYV1 514 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 IFIH1Q9BYX4 1025 aaKnown RBP12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 FAM49AQ9H0Q0 323 aaPredicted RBP12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 NCOA5Q9HCD5 579 aaKnown RBP12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 CD320Q9NPF0 282 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 RAPGEFL1Q9UHV5 662 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 TUBE1Q9UJT0 475 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 NFASCO94856 1347 aa12.76□□□□□ -0.37
LIMCH1-214ENST00000512228 FOSP01100 380 aaPredicted RBP12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 PDIA3P30101 505 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 MYH9P35579 1960 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 METAP2P50579 478 aaKnown RBP eCLIP12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 STAT5BP51692 787 aa12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 CCT2P78371 535 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 TOB2Q14106 344 aaPredicted RBP12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 KRT32Q14532 448 aa12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 ABHD15Q6UXT9 468 aa12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 KHSRPQ92945 711 aaKnown RBP eCLIP12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 GJA10Q969M2 543 aa12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 UHRF1Q96T88 793 aaPredicted RBP12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 ZMYND12Q9H0C1 365 aa12.75□□□□□ -0.37
LIMCH1-214ENST00000512228 TTC28Q96AY4 2481 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 CYP3A4P08684 503 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 HMGB1P09429 215 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 CD52P31358 61 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 EVCP57679 992 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 MRPS6P82932 125 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 PPP1R18Q6NYC8 613 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 TAF2Q6P1X5 1199 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 BLOC1S2Q6QNY1 142 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 PLPPR4Q7Z2D5 763 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 PLA2G4DQ86XP0 818 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 CCDC60Q8IWA6 550 aaPredicted RBP12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 TMEM192Q8IY95 271 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 FBXL16Q8N461 479 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 FBXO22Q8NEZ5 403 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 HLA-CQ95604 372 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 LENG9Q96B70 501 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 SDF4Q9BRK5 362 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 TMX1Q9H3N1 280 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 RC3H2Q9HBD1 1191 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 PCDHA2Q9Y5H9 948 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 MUC3AQ02505 3323 aa12.74□□□□□ -0.37
LIMCH1-214ENST00000512228 XIRP2A4UGR9 3374 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 POTEB3A0JP26 581 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms